Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          27   0.36 
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          25   1.9  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   1.9  
DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.       24   4.5  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   5.9  
AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic acetylch...    23   7.8  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 27.5 bits (58), Expect = 0.36
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 311 KTPSAGSREETGWWQKRERQELQTFRSRP-SWLAAR*NGAVRTRVPRHT 454
           ++ S GSR  +   Q R R + +T RSR  + L AR  G VR R+ R T
Sbjct: 430 RSRSRGSRSRSRTSQSRSRSKTRTSRSRSRTPLPAR--GHVRARLTRRT 476


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 350 TILSPPDFQHSAFSTSIKHLLESYALQVPANHHTNNVRD 234
           TIL P +  +S    S+ + L+  +  VP N   N + D
Sbjct: 157 TILVPKNLSNSQGENSVTYTLDDLSNTVPVNTQYNALND 195


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -1

Query: 530  SSTRESSMTRANSAGILXPGDIKQAVCGGERASGLRRS 417
            S +R  S +R+ SAG    G   ++  G + + G RRS
Sbjct: 1126 SRSRSRSRSRSQSAGSRKSGSRSRSRSGSQASRGSRRS 1163


>DQ974172-1|ABJ52812.1|  409|Anopheles gambiae serpin 13 protein.
          Length = 409

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -1

Query: 389 IEKSVALVFPSSATILSPPDFQHSAFSTSIKHLLESYALQVPANHHTNNV 240
           +++S     P+S+++  P     S FST     L++  L +P +  T+NV
Sbjct: 168 VKRSGGSQSPASSSVALPSVSFRSGFSTGFSKALDATILALPGS--TSNV 215


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -2

Query: 280 MHFRSPLTITPTTSVTSYCFNHILFFFKLRHTKTPRRL*HFSVS 149
           +HFRSP T T    V +   NH+     +R     + L HFS +
Sbjct: 326 IHFRSPQTHTMAPWVRTIFINHLPKLLVMRR-PIYQPLHHFSAA 368


>AY705399-1|AAU12508.1|  533|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 5 protein.
          Length = 533

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 424 RSPDARSPPHTACLIS 471
           R PDA +PPHT C  S
Sbjct: 450 RMPDAIAPPHT-CFTS 464


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 595,857
Number of Sequences: 2352
Number of extensions: 11325
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)