Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens ...    31   4.3  
BC020548-1|AAH20548.1|  860|Homo sapiens transforming growth fac...    29   9.9  
AF022795-1|AAC16903.1|  860|Homo sapiens TGF beta receptor assoc...    29   9.9  
AC012360-3|AAY15010.1|  860|Homo sapiens unknown protein.              29   9.9  

>AK097452-1|BAC05058.1|  225|Homo sapiens protein ( Homo sapiens
           cDNA FLJ40133 fis, clone TESTI2012231. ).
          Length = 225

 Score = 30.7 bits (66), Expect = 4.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 319 RRFPHPSNTS*SPMHFRSPLTITPTTSVTSYCFNHILFFFKLRHTKTP 176
           + F H ++T  +  H  +PLT TP T +T +            +T TP
Sbjct: 59  KAFTHTTHTPLTSTHLHTPLTHTPRTHITHHSQTQHTLLIHQSYTHTP 106


>BC020548-1|AAH20548.1|  860|Homo sapiens transforming growth
           factor, beta receptor associated protein 1 protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 DRKVCSSCLSLFCHHPVSSRLPALGVFHIH 301
           D+K+C  C + FC  PV  R P  G+ H H
Sbjct: 814 DKKLCQICQNPFC-EPVFVRYPNGGLVHTH 842


>AF022795-1|AAC16903.1|  860|Homo sapiens TGF beta receptor
           associated protein-1 protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 DRKVCSSCLSLFCHHPVSSRLPALGVFHIH 301
           D+K+C  C + FC  PV  R P  G+ H H
Sbjct: 814 DKKLCQICQNPFC-EPVFVRYPNGGLVHTH 842


>AC012360-3|AAY15010.1|  860|Homo sapiens unknown protein.
          Length = 860

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 390 DRKVCSSCLSLFCHHPVSSRLPALGVFHIH 301
           D+K+C  C + FC  PV  R P  G+ H H
Sbjct: 814 DKKLCQICQNPFC-EPVFVRYPNGGLVHTH 842


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,247,494
Number of Sequences: 237096
Number of extensions: 1565297
Number of successful extensions: 8476
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8476
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6579110070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)