Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D06
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger pro...    31   0.65 
L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger pro...    31   0.65 
L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger pro...    31   0.65 
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    31   0.86 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    31   0.86 
Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical pr...    28   4.6  

>U20555-1|AAC46918.1|  839|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 839

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 346 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRIPA 492
           +VA       TDF    +  R+A ERR+  A+S P T+    P   IPA
Sbjct: 485 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 533


>L23645-6|AAO91714.1|  635|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform c protein.
          Length = 635

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 346 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRIPA 492
           +VA       TDF    +  R+A ERR+  A+S P T+    P   IPA
Sbjct: 253 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 301


>L23645-4|AAK26137.1|  867|Caenorhabditis elegans Zinc finger
           protein protein 1,isoform a protein.
          Length = 867

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +1

Query: 346 MVAEEGKTRATDFSIAAIMARSAVERRSPDARSPPHTACLISPGXRIPA 492
           +VA       TDF    +  R+A ERR+  A+S P T+    P   IPA
Sbjct: 485 LVAPIVSETVTDFQRDRVADRTAAERRAAAAQSQPSTSTNGGPNVTIPA 533


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
            ATPase protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/86 (22%), Positives = 37/86 (43%)
 Frame = -1

Query: 509  MTRANSAGILXPGDIKQAVCGGERASGLRRSTALRAMMAAIEKSVALVFPSSATILSPPD 330
            M   N  G+   G + Q   GG +  G+RR    R +   ++     V  +   +  P  
Sbjct: 2277 MRSNNGGGVGGQGGL-QGGPGGPQ--GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQG 2331

Query: 329  FQHSAFSTSIKHLLESYALQVPANHH 252
             Q ++    + H+  + ++Q+P +HH
Sbjct: 2332 MQQASQGPPVLHMQRAVSMQMPTSHH 2357


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
            protein Y111B2A.22 protein.
          Length = 2395

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 19/86 (22%), Positives = 37/86 (43%)
 Frame = -1

Query: 509  MTRANSAGILXPGDIKQAVCGGERASGLRRSTALRAMMAAIEKSVALVFPSSATILSPPD 330
            M   N  G+   G + Q   GG +  G+RR    R +   ++     V  +   +  P  
Sbjct: 2277 MRSNNGGGVGGQGGL-QGGPGGPQ--GIRRPLVGRPLQRGVDNQAPTV--AQVVVAPPQG 2331

Query: 329  FQHSAFSTSIKHLLESYALQVPANHH 252
             Q ++    + H+  + ++Q+P +HH
Sbjct: 2332 MQQASQGPPVLHMQRAVSMQMPTSHH 2357


>Z83233-5|CAB05765.2|  340|Caenorhabditis elegans Hypothetical
           protein K06B4.5 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = -1

Query: 437 ASGLRRSTALRAMMAAIEKSVALVFPSSATILSPPDFQHSAFSTSIKHLLESYALQVPA 261
           A+ LR  T  RAM + +EK   L+FP+   I   P   ++ F  S   L+   AL++ A
Sbjct: 163 ANILRTGTMARAMKSVLEKRSILIFPNEENIF--PVEMNTMFENS-DVLVHQIALRIVA 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,893,089
Number of Sequences: 27780
Number of extensions: 245799
Number of successful extensions: 697
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)