Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_D04
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 107 2e-24
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 77 2e-15
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 72 1e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 59 8e-10
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 56 4e-09
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 54 2e-08
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 52 1e-07
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 51 2e-07
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 3e-07
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 50 5e-07
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 49 7e-07
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 48 1e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 47 4e-06
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 3e-05
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 44 3e-05
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 43 4e-05
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 40 5e-04
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 40 5e-04
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 36 0.009
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 36 0.009
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 35 0.012
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 31 0.14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 30 0.44
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 30 0.44
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 29 0.58
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 27 2.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 3.1
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 26 5.4
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 7.1
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 7.1
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 26 7.1
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 7.1
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2... 25 9.4
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 9.4
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 25 9.4
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 107 bits (256), Expect = 2e-24
Identities = 50/112 (44%), Positives = 69/112 (61%), Gaps = 1/112 (0%)
Frame = +1
Query: 460 SVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 639
+V+ E +YR + I V G ++P P E +GFP Y+ +K G PT IQ Q
Sbjct: 92 NVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQ 151
Query: 640 GWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIK-ENKAKKGRGPXVLVLAP 792
WP+A+SG++ VGI+ TG+GKTL++ LPA+VHI + G GP VLVLAP
Sbjct: 152 AWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLAP 203
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 77.4 bits (182), Expect = 2e-15
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 2/112 (1%)
Frame = +1
Query: 463 VKTEQKKEDDDYRSD-NSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQ 639
+K E D+ R+ + I + G D P P G + + G KPT IQ+Q
Sbjct: 388 LKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQ 447
Query: 640 GWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENK-AKKGRGPXVLVLAP 792
P SG++ +G+A+TG+GKT+AFLLP HIK+ + K G GP +++ P
Sbjct: 448 AIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIMTP 499
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 4/102 (3%)
Frame = +1
Query: 499 RSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVG 678
+ D +I++ G D+P+P + E +G P + LK +P+ IQ P+ L K+ +G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 679 IAQTGTGKTLAFLLPAVVHIKE----NKAKKGRGPXVLVLAP 792
IA+TG+GKT AF++P ++ I + ++ GP +VLAP
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAP 333
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 58.8 bits (136), Expect = 8e-10
Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Frame = +1
Query: 460 SVKTEQKKEDDDYRSDNSITVIGQDIPS--PFVDIEASGFPEYIKTFLKMQGITKPTVIQ 633
S E E++D R S+ + F D++ S E I+ +K G T IQ
Sbjct: 60 SESEELDNENEDERVQKSVNLNASSTSDIEKFSDLQLS---ENIQKAIKEMGFETMTEIQ 116
Query: 634 SQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
+ P L+G++ +G A+TG+GKTLAFL+P + + K K G V++++P
Sbjct: 117 KRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIEMLYALKFKPRNGTGVIIISP 169
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 56.4 bits (130), Expect = 4e-09
Identities = 27/64 (42%), Positives = 43/64 (67%)
Frame = +1
Query: 601 MQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVL 780
++ +PT IQ+ WP L+G++ VGIA+TG+GKT+AF +PA+ ++ K P VL
Sbjct: 182 LKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQYLNGLSDNKS-VPRVL 240
Query: 781 VLAP 792
V++P
Sbjct: 241 VVSP 244
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 54.4 bits (125), Expect = 2e-08
Identities = 26/80 (32%), Positives = 46/80 (57%)
Frame = +1
Query: 553 DIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVV 732
+ ++ G + + + +G PT IQ + P+ L G++ VG+A+TG+GKT AF++P +
Sbjct: 70 NFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIE 129
Query: 733 HIKENKAKKGRGPXVLVLAP 792
H+K A L+L+P
Sbjct: 130 HLKSTLANS--NTRALILSP 147
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/73 (35%), Positives = 39/73 (53%)
Frame = +1
Query: 505 DNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIA 684
D + V G DI P + + ++ +K+ G T+PT +Q PI SG++ + A
Sbjct: 155 DIPVEVSGGDI-EPVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACA 213
Query: 685 QTGTGKTLAFLLP 723
QTG+GKT FL P
Sbjct: 214 QTGSGKTAGFLFP 226
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 51.2 bits (117), Expect = 2e-07
Identities = 32/107 (29%), Positives = 56/107 (52%)
Frame = +1
Query: 472 EQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPI 651
++K+E+++ NS + F ++ + + K+ LK T IQ Q P
Sbjct: 16 KRKEEEEEIEELNSQIEALSETVDHFAELPLT---QPTKSALKNAHFITLTEIQKQCIPS 72
Query: 652 ALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
AL G++ +G A+TG+GKTLAF++P + ++ K G LV++P
Sbjct: 73 ALKGRDILGAAKTGSGKTLAFIVPLIENLYRKKWTSLDGLGALVISP 119
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/61 (42%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = +1
Query: 616 KPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKA--KKGRGPXVLVLA 789
KPT +QS+ P+AL GK+ V A+TG+GKT A+L+P + + + K + RG L+L
Sbjct: 36 KPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLLV 95
Query: 790 P 792
P
Sbjct: 96 P 96
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 49.6 bits (113), Expect = 5e-07
Identities = 21/50 (42%), Positives = 34/50 (68%)
Frame = +1
Query: 607 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAK 756
G +P+ IQ + PIALSG++ + A+ GTGKT AF++P++ + K+K
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSK 112
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 49.2 bits (112), Expect = 7e-07
Identities = 27/62 (43%), Positives = 37/62 (59%)
Frame = +1
Query: 607 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVL 786
G PT IQ + P+AL GK+ VG A TG+GKT AF++P + + + KK VL+L
Sbjct: 278 GFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILERLL-YRPKKVPTTRVLIL 336
Query: 787 AP 792
P
Sbjct: 337 CP 338
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 48.4 bits (110), Expect = 1e-06
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +1
Query: 607 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKEN 747
G PT IQ + P+ L+ ++ +G+AQTG+GKT AF LP + + N
Sbjct: 65 GFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNN 111
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 46.8 bits (106), Expect = 4e-06
Identities = 25/81 (30%), Positives = 42/81 (51%)
Frame = +1
Query: 550 VDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAV 729
+ ++ +++K + QG K T +Q+ P+ L K+ V A TG+GKTLA+LLP
Sbjct: 1 MSFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCF 60
Query: 730 VHIKENKAKKGRGPXVLVLAP 792
+ + G L++AP
Sbjct: 61 DKVTRRDTDE-TGLGALIVAP 80
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.0 bits (99), Expect = 3e-05
Identities = 30/73 (41%), Positives = 39/73 (53%)
Frame = +1
Query: 574 PEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKA 753
PE + + K G +KP IQS P A G + +G A TG+GKTLAF +P + H N
Sbjct: 131 PEMLGSLSKA-GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRNVD 189
Query: 754 KKGRGPXVLVLAP 792
K LV+AP
Sbjct: 190 AK--YVQALVVAP 200
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/75 (37%), Positives = 38/75 (50%)
Frame = +1
Query: 568 GFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLPAVVHIKEN 747
G ++ LK I +PT IQ L G+N +G A+TG+GKT AF LP + E
Sbjct: 13 GISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII----EK 68
Query: 748 KAKKGRGPXVLVLAP 792
+K G L+L P
Sbjct: 69 WSKDPSGIFALILTP 83
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 43.2 bits (97), Expect = 4e-05
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +1
Query: 574 PEYIKTFLKMQGITKPTVIQSQGWPIALSG--KNFVGIAQTGTGKTLAFLLPAVVHIKEN 747
PE +K M+ KP+ IQ + P+ LS +N +G +Q+GTGKT AF L + + +
Sbjct: 123 PELLKGIYSMK-FQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS 181
Query: 748 KAKKGRGPXVLVLAP 792
K P + LAP
Sbjct: 182 VPK----PQAICLAP 192
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +1
Query: 571 FPEYIKTF-LKMQGITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAFLLP 723
FPE I LK Q IT+ T IQ P S ++ + A TG+GKT+A+L P
Sbjct: 52 FPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFP 103
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 5/66 (7%)
Frame = +1
Query: 610 ITKPTVIQSQGWPIALS--GKNFVGIAQTGTGKTLAFLLPAV---VHIKENKAKKGRGPX 774
I+ PT IQS P L+ K+ AQTG+GKTLA+LLP V + + +N + G
Sbjct: 159 ISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIY 218
Query: 775 VLVLAP 792
+++AP
Sbjct: 219 AVIMAP 224
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 655 LSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
L+ N + + TG GK+L+FL+PA++ K K LVL P
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVP 1249
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 35.5 bits (78), Expect = 0.009
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 655 LSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
L+ N + + TG GK+L+FL+PA++ K K LVL P
Sbjct: 1204 LNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVLVP 1249
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.012
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = +1
Query: 544 PFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGW-PIALSGKNFVGIAQTGTGKTLAFLL 720
P + E + K L G K T +Q + + + +N V A+TGTGKTLAFLL
Sbjct: 36 PTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLL 95
Query: 721 PAVVHIKENKAK 756
A + + K +
Sbjct: 96 VAFKDVLKGKPR 107
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 31.5 bits (68), Expect = 0.14
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +1
Query: 394 SILHNQILKGTKLRELQILRFYSVKTEQKKEDDDYRSDNS 513
S L N KG+KLR + +Y VK +Q+K+ D +S N+
Sbjct: 66 SYLSNATFKGSKLRIEEARPYYLVKLQQEKKIADLQSTNN 105
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.9 bits (64), Expect = 0.44
Identities = 26/100 (26%), Positives = 46/100 (46%)
Frame = +1
Query: 493 DYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSGKNF 672
D D+ I ++ F D+ PE ++ + G +P+ IQ + L ++
Sbjct: 3 DQLEDSVIETNYDEVIDTFDDMNLK--PELLRG-IYAYGFERPSAIQQRAIMPILGERDV 59
Query: 673 VGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
+ AQ+GTGKT F + + I + K+ + L+LAP
Sbjct: 60 LAQAQSGTGKTATFSISVLQKI-DTSLKQCQ---ALILAP 95
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.9 bits (64), Expect = 0.44
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +1
Query: 655 LSGKNFVGIAQTGTGKTLAFLLPAVVHIKENKAKKGRGPXVLVLAP 792
LSGK+ + TG GK+L + LPAV+ E A +G LV++P
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI---EGGASRG---VTLVISP 571
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 607 GITKPTVIQSQGWPIALSGKNFVGIAQTGTGKTLAF 714
G P+ +QS+ G++ + AQ+GTGKT F
Sbjct: 40 GYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATF 75
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.5 bits (58), Expect = 2.3
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Frame = +1
Query: 343 IVETNVFHTHIIPKVQYSILHNQILKGTKLRELQILRFYS-VKTEQKKEDDDYRSDNSIT 519
I+ NV + I PK+ L Q + G+ + + RF+ + EQ+ +
Sbjct: 684 ILNRNVDKSKIDPKLIRKTLPFQNINGSLVSGFVVKRFFEIISKEQEASSQQENIQKAYE 743
Query: 520 VIGQDIPS-PFVDIEASGFPEYIKTFLK 600
+I ++ P+ + + F E+ KTF++
Sbjct: 744 IIEKEFPTIGSAENHIAQFLEFWKTFME 771
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 433 RELQILR--FYSVKTEQKKEDDDYRSDNSITVIGQDIPSPFVDIEASGFP 576
R+L I R F + E + E + YR+ + ++ D+P FV+ S +P
Sbjct: 697 RQLVINREAFEDMDPESRAEIEGYRAGTYVRIVINDVPFEFVEHFDSRYP 746
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 601 MQGITKPTVIQS-QGWPIALSGKNFVGIAQTGTGKTLAFLLPAV 729
+Q P ++Q + P+ G + A TG+GKTL++++P V
Sbjct: 152 VQAAVLPLLLQDGRHGPMYSYGGDVCVSAATGSGKTLSYVIPIV 195
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 296 Y*NERSCPNYYLTNNK**KQMYFTLTLF 379
Y N SCPN+Y ++K K+ Y LT+F
Sbjct: 14 YQNLCSCPNHYAQHSK-NKRNYHQLTIF 40
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 200 YSYLNFFXEIAYRVSWLKTKINXKWL 277
Y+ L+ + YRV WLK++ + WL
Sbjct: 2091 YALLSTTGQDLYRVLWLKSRSSEAWL 2116
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +1
Query: 412 ILKGTKLRELQILR-----FYSVKTEQKKEDDDYRSDN 510
ILK ++ +Q LR YSV TE + D RSDN
Sbjct: 234 ILKDSQKERIQALRNKAIKTYSVSTESAERIDSIRSDN 271
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 496 NHHL-PFSAQFLQNKILRF 443
N HL PFS FL+N ++RF
Sbjct: 85 NQHLFPFSISFLKNDVVRF 103
>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 267 ENGFKCAHKVIKTKGVVQIITLQTTNSRN 353
+NG K K+++ KG I ++TT N
Sbjct: 134 DNGIKALEKIMRQKGRFDNIVIETTGIAN 162
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 433 RELQILRFYSVKTEQKKEDDDYRSD 507
R + +RF S E +EDDDY S+
Sbjct: 3 RRARSIRFSSDDNEDNEEDDDYYSN 27
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 9.4
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +1
Query: 484 EDDDYRSDNSITVIGQDIPSPFVDIEASGFPEYIKTFLKMQGITKPTVIQSQGWPIALSG 663
EDDD N +++ SP + A E L+ QG+ + V+ + W
Sbjct: 552 EDDDEEPPN------EEVASPTAVVRARNVFENALAHLRQQGLKEERVVLLEAW------ 599
Query: 664 KNFVGIAQT-GTGKTLAFLLPAVV 732
K F + T T K ++ L+P VV
Sbjct: 600 KQFEAMHGTEDTRKHVSSLMPQVV 623
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,051,445
Number of Sequences: 5004
Number of extensions: 61113
Number of successful extensions: 190
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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