Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D02
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces pombe...    27   1.5  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   3.5  
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch...    26   4.7  
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   6.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    25   8.1  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   8.1  

>SPAPB1A10.14 |||F-box protein, unnamed|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 301 SCVELPLLTRRAWLHNTRPHTQPDHTKTESNSPYLCGV 414
           SC + P+  RR WL + +P  QP+    + N+ ++ G+
Sbjct: 172 SCFQDPIRVRRDWLDSIKP-GQPETLWFDQNTQHVIGL 208


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 377 PKLNRILLISVAFLCILVSFFTTWI 451
           P +  +L + ++ L ++V FFT W+
Sbjct: 81  PNIYSLLRLLISVLAVIVVFFTAWV 105


>SPCC320.10 |srp72||signal recognition particle subunit
           Srp72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 404 SVAFLCILVSFFTTWIFMRMKLPGYLQN*FVS 499
           S+ F  IL+   T  +    KLPGYL+N F S
Sbjct: 291 SIYFSTILLREETKSLISPKKLPGYLENLFKS 322


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 316 PLLTRRAWLHNTRP-HTQPDHTKTESNSPYLCGVPMYFSVI 435
           P  T +   +NT P + QP+ TK  +NSP     P+Y +V+
Sbjct: 145 PGSTNQQQQNNTNPINNQPEDTKPNTNSP-----PVYHTVL 180


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -3

Query: 233  HRSLNPRSVARLSHRK*YLQ*P-KSKRVTPVXRLSWQXEXEAMXV---S*FLCLEFPK 72
            ++ + PR +A L  R+  ++   K    TP  RL W  + +A+ +   S + CL + K
Sbjct: 887  NQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYTK 944


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 394 SPYLCGVPMYFSVILYHLDI 453
           +P  CG P YF VI + +D+
Sbjct: 421 NPTACGCPDYFKVIKHPMDL 440


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,484,182
Number of Sequences: 5004
Number of extensions: 49718
Number of successful extensions: 107
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)