Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D02
         (586 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   2e-10
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)                 30   1.6  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.5  

>SB_44532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 414

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 37/90 (41%), Positives = 51/90 (56%)
 Frame = -2

Query: 543 NLLVLQPKNKTVQN*LTN*FCKYPGNFIRINIQVVKNDTKIHRNATEIRRIRFSFGVVGL 364
           ++L+   KN+T +   T   C Y G+FI +  + VKNDT  H    +  R R S  +   
Sbjct: 3   DILLKNDKNRTPERQGT---CTY-GSFILMKTRQVKNDTSTHTKPIKSSRNRLSLDMPTE 58

Query: 363 CVRSSIMKPSPPSEKRKLDARPSMMY*PLT 274
              S +M P+PP E +KL+ARPSMMY PLT
Sbjct: 59  LDLSRMMNPTPPIENKKLEARPSMMYCPLT 88


>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
          Length = 666

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = +1

Query: 349 TRPHTQPDHTKTESNSPYLCGVPMYFSVILYHLDIYAYEVARIFTEL 489
           T P T+ D  ++  ++P  CG+ +    +L+ + I+ Y +  +FT L
Sbjct: 370 TDPGTRNDTEESPKSTPRKCGLALLSVTLLFTVFIHFYALQTLFTRL 416


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 346 NTRPHTQPDHTKTESNS 396
           N RPHT  DH+K ES +
Sbjct: 199 NPRPHTNADHSKPESGT 215


>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2021

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 280  WSVHHGRSCVELPLLTRRAWLHNTRPHTQPDHTKTESNS 396
            W    GR+C  LP +    W+H   P+ + DH  T   S
Sbjct: 1816 WRTITGRTCNCLPEIRTNWWIH--PPYVRQDHPTTNITS 1852


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,427,128
Number of Sequences: 59808
Number of extensions: 373863
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 728
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)