Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D02
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine rece...    27   9.8  
AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical ...    27   9.8  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical protein
            R03G5.3 protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
 Frame = -1

Query: 91   YVWNF--QNCKRYCK*PFXF 38
            Y+WN+  +NCK + K PF F
Sbjct: 995  YIWNYTPENCKLFLKIPFFF 1014


>U64835-6|AAG24199.1|  341|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 9 protein.
          Length = 341

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 412 VPMYFSVI-LYHLDIYAYEVARIFTEL 489
           +P+  S+I LYH+  Y  E+ RIFT +
Sbjct: 276 IPLLSSIISLYHIRPYRREILRIFTRV 302


>AF039718-3|AAB96744.1|  329|Caenorhabditis elegans Hypothetical
           protein T12F5.2 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +1

Query: 409 GVPMYFSVILYHLDIYAYEVARIFTELICKLILYCF 516
           G   Y +V   H++++   +A IF  LIC LILY F
Sbjct: 296 GSTYYKNVSTEHINLHI--LAPIFINLICILILYVF 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,690,693
Number of Sequences: 27780
Number of extensions: 278869
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)