Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D01
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155...   125   2e-29
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328...   125   2e-29
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381...   124   4e-29
01_05_0589 + 23459847-23460344,23460493-23461296                       27   6.0  
08_02_1022 + 23707993-23708528,23708620-23708706,23708807-237088...    27   7.9  
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225     27   7.9  

>08_02_0790 -
           21214282-21214369,21214455-21214564,21215478-21215557,
           21215659-21215737
          Length = 118

 Score =  125 bits (302), Expect = 2e-29
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
           MVQRLT+R+R SY TKSN  R+V+TPGGRLVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 218 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 343
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104


>08_01_0372 +
           3286861-3286939,3287220-3287299,3289041-3289150,
           3289224-3289311
          Length = 118

 Score =  125 bits (302), Expect = 2e-29
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
           MVQRLT+R+R SY TKSN  R+V+TPGGRLVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 218 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 343
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104


>09_04_0106 -
           14636773-14636863,14636948-14637057,14638107-14638186,
           14638302-14638380
          Length = 119

 Score =  124 bits (299), Expect = 4e-29
 Identities = 62/104 (59%), Positives = 76/104 (73%), Gaps = 2/104 (1%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
           MVQRLT+R+R SY TKSN  R+V+TPGG+LVYQY KK    P+C     K++GI   RPA
Sbjct: 1   MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60

Query: 218 E--RSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIVK 343
           E  RSRL   ++TV R YGGVL    V++RI+RAFL+EEQKIVK
Sbjct: 61  EYKRSRLSRNRRTVNRPYGGVLSGTAVRERIIRAFLVEEQKIVK 104


>01_05_0589 + 23459847-23460344,23460493-23461296
          Length = 433

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 231 RRERSAGLAGWIPRSLLLH*PHLGIFL 151
           R +R   + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312


>08_02_1022 +
           23707993-23708528,23708620-23708706,23708807-23708863,
           23708955-23709261,23709545-23709631,23709720-23709767
          Length = 373

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 226 GTFSRSSWLDTTEFALALTTPWDLLGLFYILINQAA 119
           G + + SWL    FA+ALT  + L+    +LI Q A
Sbjct: 22  GVYLQRSWLVLLMFAVALTPTYVLMEDLLLLIGQPA 57


>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
          Length = 489

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 234 QRRERSAGLAGWIPRSLLLH*PHLGIFL 151
           + +ER   LA W P+ L+L  P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,884,609
Number of Sequences: 37544
Number of extensions: 226961
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)