Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_D01
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...   120   4e-28
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    29   2.3  
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    29   2.3  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    28   3.1  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    28   4.1  
U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical p...    27   9.4  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score =  120 bits (290), Expect = 4e-28
 Identities = 59/101 (58%), Positives = 71/101 (70%)
 Frame = +2

Query: 38  MVQRLTFRRRLSYNTKSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 217
           M  R+T+RRRLSYNT SN +R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 218 ERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQKIV 340
               L   ++TV R YGG L    VK+RI RAFL+EEQKIV
Sbjct: 61  ALRLLKRNERTVTRAYGGCLSPNAVKERITRAFLVEEQKIV 101


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 29   SLKMVQRLTFRRRLSYNT-KSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 205
            S  +V   +F  +++  T K   R++V      L YQ++ K  + PR  +   +L G+  
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377

Query: 206  ARPAERSRLCYRKKTVKR 259
               A  S  C R  T++R
Sbjct: 2378 TLLANNSETCRRNLTIQR 2395


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +2

Query: 29   SLKMVQRLTFRRRLSYNT-KSNXRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 205
            S  +V   +F  +++  T K   R++V      L YQ++ K  + PR  +   +L G+  
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380

Query: 206  ARPAERSRLCYRKKTVKR 259
               A  S  C R  T++R
Sbjct: 2381 TLLANNSETCRRNLTIQR 2398


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = +2

Query: 2   LSLVTRLSKSLKMVQRLTFRRRLSYNTKSNXRRIVRTPG-GRLVYQYVKKPKKIPRCGQC 178
           +S  T  S SL +V   + RRR S  ++S+ R +VR+   G +  +   +     R G+ 
Sbjct: 61  VSTHTAKSPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRS 120

Query: 179 KSKLRGIQPARPAERSR 229
           +S  R    +R   RSR
Sbjct: 121 RSSKRSRSRSRSRSRSR 137


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
 Frame = +2

Query: 2   LSLVTRLSKSLK-MVQRLTFRRRLSYN--TKSNXRRIVRTPGGRLVYQYVKKPKKIPRCG 172
           L +V R + + K +V +LT +++ +    TK+  +  V  P      + +KKP K+PR  
Sbjct: 54  LFIVDRTATANKPVVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGN 113

Query: 173 QCKSKLRGIQPARPAERSR 229
              +  +G + A PA + +
Sbjct: 114 AILALKKGPKAAAPAAKKK 132


>U14635-13|AAC46654.2|  322|Caenorhabditis elegans Hypothetical
           protein C27H5.6 protein.
          Length = 322

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 259 TFHCFLTVAKTGTFSRSSW 203
           TFHC LTV +    +R SW
Sbjct: 109 TFHCLLTVERVLAVNRVSW 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,179,822
Number of Sequences: 27780
Number of extensions: 192790
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)