Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C24
         (853 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    28   1.9  
SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces ...    27   2.6  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    26   5.9  
SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    26   7.8  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 684  NFHLHLVPVESRARSPDAAVRDTM 613
            NFH  LV + SRAR PD   R T+
Sbjct: 1056 NFHTQLVSLISRARDPDYYSRPTI 1079


>SPBC1773.14 |arg7||argininosuccinate lyase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 461

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = -1

Query: 538 IVEN*VCGSFIICHLILFPQDSFVLFFSAHFFIISKLPGHFTGNSILPAHSN 383
           ++E       ++ H+  F +D  +++ S+ F  ++    + TG+SI+P   N
Sbjct: 240 VIEFMFWAGMVMLHISRFAED-LIIYSSSEFGFVTLSDAYSTGSSIMPQKKN 290


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 19/77 (24%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
 Frame = -1

Query: 739 HSMSKMFNIKTVCITWRIKLPSSLGSCGE*SKKSRCSRERHNVINCRCE-CTQNVETAQD 563
           H+  K  N  + C + +   PS   SC    KKS CS ++ +  +   + C    +T+  
Sbjct: 213 HAELKSVNEGSSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCC 272

Query: 562 DNSQEKCVIVEN*VCGS 512
              ++ C   E   C S
Sbjct: 273 SQEKKSCCTSEKPSCCS 289


>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -1

Query: 634 CSRERHNVINCRCECTQNVETAQDDNSQEK 545
           C    +  INCRC  ++  E+A  D S  K
Sbjct: 29  CVSNENGCINCRCSPSEPHESANVDESVNK 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,507
Number of Sequences: 5004
Number of extensions: 64225
Number of successful extensions: 162
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)