Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C24
         (853 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)              132   5e-31
SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  

>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score =  132 bits (318), Expect = 5e-31
 Identities = 60/114 (52%), Positives = 82/114 (71%)
 Frame = +2

Query: 134 NNKAFTKEEXLLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFIL 313
           N K  +KE+ LLLQ+FSR+VSTKSS LFY NA IVSAIP+WLFWR+H ++  ++ I F +
Sbjct: 3   NGKKLSKEDELLLQNFSRSVSTKSSILFYANALIVSAIPLWLFWRIHQMDPYSSGILFAV 62

Query: 314 VTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDER 475
           +T  STWL+A AY+N KFQLKH             ++++L  +KK++R+EKDER
Sbjct: 63  MTLVSTWLVAFAYKNVKFQLKHKIAQRRDAAITKEVNQELDPNKKLTRQEKDER 116


>SB_29755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -1

Query: 682 LPSSLGSCGE*S--KKSRCSRERHNVINCRCECTQ 584
           LPS   +CG  +  ++SRCS  R +V  CR  C +
Sbjct: 470 LPSKRSTCGTCAPRRQSRCSCVRSSVAGCRTACVR 504


>SB_47092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 654 SPQEPSEDGSLMRHVIQTVLILNILDILWQL 746
           SPQ       L  HVIQT +ILN +D L ++
Sbjct: 208 SPQTIRRSAELPHHVIQTCIILNDIDGLLEI 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,193,437
Number of Sequences: 59808
Number of extensions: 490505
Number of successful extensions: 999
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2419355818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)