Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C20
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...   188   6e-49
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.0  
SPAC22E12.14c |sck2||serine/threonine protein kinase Sck2|Schizo...    26   5.3  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   7.0  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   7.0  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   9.3  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    25   9.3  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score =  188 bits (459), Expect = 6e-49
 Identities = 100/214 (46%), Positives = 138/214 (64%), Gaps = 1/214 (0%)
 Frame = +3

Query: 138 QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 317
           Q R+L +HEYIS+ +LR  G+ VP+   A++ +EA K A +L   D+V+KAQVLAGGRGK
Sbjct: 19  QKRNLALHEYISHDILRKFGVDVPRGAPARSGEEAEKVARDLKVTDLVVKAQVLAGGRGK 78

Query: 318 GTFKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYY 497
           G F +GL+GGVR V     A   A +M+   L+T+QTG AG+ICN+V V ERKF R+EYY
Sbjct: 79  GQFDSGLRGGVRPVYDATEARMFAEQMIGHKLITRQTGPAGKICNVVYVCERKFIRKEYY 138

Query: 498 VAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDDQICRVIEKIGL 677
            AI+M+R    P+I+AS QGGV+IE VAAENP AI    +     +       +++K+G 
Sbjct: 139 FAILMDRENQCPMIVASDQGGVDIETVAAENPSAIIKRSLPNSPNLDPHIAEELVDKLGF 198

Query: 678 QEFA-TEAHGMIKKMYDLFLKKDALLIEVNPYAE 776
              +  +A   I K+Y +F   DA  +E+NP AE
Sbjct: 199 SSSSKPKAVDAIVKLYKVFNDCDATQVEINPLAE 232


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 439  PAAPVCFVTKSCLSIFPA-ISPATSGVLTIRTPPLSPFLKVPFPRPPA 299
            P  PV  +  S     P+ ++PAT+   T+  P  S F  VP P PPA
Sbjct: 1490 PNVPVPSMIPSVAQQPPSSVAPATAPSSTL-PPSQSSFAHVPSPAPPA 1536


>SPAC22E12.14c |sck2||serine/threonine protein kinase
           Sck2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 646

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 172 VILYYGTMEFLYPNLMWPKP 231
           V++ +GT EF+ P L W  P
Sbjct: 123 VVVQFGTTEFVSPPLKWESP 142


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 180  LLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAG 305
            +L D G+  PK+    + DEA KF   +    +V  + VL+G
Sbjct: 1135 MLDDIGVDQPKWKELTSFDEADKFCDTVGYPVLVRPSYVLSG 1176


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
           Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 183 LRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGTFKN 332
           L +  IP+ +     T DEA++ A E  +  +++++    GG G G   N
Sbjct: 215 LNEINIPIAESVAVSTVDEALQ-AAEKVSYPVIIRSAYSLGGLGSGFANN 263


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +3

Query: 105 ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATEL-NTKDIV 281
           ASS+    S+ Q + +  HE   Y L+R H  P  +    K ++EA +   ++   K++V
Sbjct: 297 ASSSASSSSRTQAKSIPSHERTHYRLIRQH--PELEHVWEKLEEEAPREVKQIEQPKELV 354

Query: 282 L 284
           L
Sbjct: 355 L 355


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 138 QVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGK 317
           +VR +NV + +  + L  HG+   +F+   TKD  + F    N    V+  + L   R +
Sbjct: 679 RVRVINVTDLMVLSSLHPHGMNPAEFDSLFTKDRHVHF----NYHGYVMDLKALLFDRIQ 734

Query: 318 GT 323
           GT
Sbjct: 735 GT 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,155
Number of Sequences: 5004
Number of extensions: 70986
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)