Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C20
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical pr... 200 7e-52
U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical pr... 159 2e-39
AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear recep... 29 5.0
AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear recep... 29 5.0
AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear recep... 29 5.0
AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear recep... 29 5.0
AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear horm... 29 5.0
AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear horm... 29 5.0
Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 8.7
U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeo... 28 8.7
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 8.7
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 8.7
>Z68004-1|CAA91981.1| 435|Caenorhabditis elegans Hypothetical
protein F47B10.1 protein.
Length = 435
Score = 200 bits (489), Expect = 7e-52
Identities = 102/212 (48%), Positives = 141/212 (66%), Gaps = 1/212 (0%)
Frame = +3
Query: 144 RHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVLKAQVLAGGRGKGT 323
R L +HE+ +L+++ I VP F VA+ + A A + KD V+KAQVLAGGRGKG
Sbjct: 22 RTLMLHEHHGMKILQNYEIKVPPFGVAQDAETAFSEAKRIGGKDYVVKAQVLAGGRGKGR 81
Query: 324 FKNGLKGGVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMVMVTERKFPRREYYVA 503
F +GL+GGV++V TP+ AG M+ L+TKQT G+ C VMV +R F RREYY +
Sbjct: 82 FSSGLQGGVQIVFTPDEVKQKAGMMIGANLITKQTDHRGKKCEEVMVCKRLFTRREYYFS 141
Query: 504 IMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGITDDQICRVIEKIGL-Q 680
I ++R+ NGP++IASSQGGVNIE+VAA NPDAI PID+ GIT + + K+G +
Sbjct: 142 ITLDRNTNGPIVIASSQGGVNIEEVAATNPDAIVKMPIDVNVGITKELAHEIAVKMGFSK 201
Query: 681 EFATEAHGMIKKMYDLFLKKDALLIEVNPYAE 776
+ +A +I+K+Y +F DA L+E+NP AE
Sbjct: 202 DCEQQASEIIEKLYQMFKGSDATLVEINPMAE 233
>U41557-3|AAA83304.1| 415|Caenorhabditis elegans Hypothetical
protein C50F7.4 protein.
Length = 415
Score = 159 bits (387), Expect = 2e-39
Identities = 90/229 (39%), Positives = 133/229 (58%), Gaps = 3/229 (1%)
Frame = +3
Query: 105 ASSANKFPSKQQVRHLNVHEYISYTLLRDHGIPVPKFNVAKTKDEAIKFATELNTKDIVL 284
A + +K K Q R LN+ E+ S +L HG V F VA + EA + + V+
Sbjct: 5 AGNLSKSMMKSQRRFLNLQEFQSKEILEKHGCSVQNFVVASNRKEAEEKWMSFGDHEYVV 64
Query: 285 KAQVLAGGRGKGTFKNGLKG--GVRMVNTPEVAGDIAGKMLKQLLVTKQTGAAGRICNMV 458
KAQ+LAGGRGKG F NG KG GV + + A + +M+ + LVTKQT + G + V
Sbjct: 65 KAQILAGGRGKGKFINGTKGIGGVFITKEKDAALEAIDEMIGKRLVTKQTTSEGVRVDKV 124
Query: 459 MVTERKFPRREYYVAIMMERSFNGPVIIASSQGGVNIEDVAAENPDAITYEPIDIVSGIT 638
M+ E +RE Y+A++M+R NGPV++AS GG++IE VA + P+ I PIDI G+T
Sbjct: 125 MIAEGVDIKRETYLAVLMDRESNGPVVVASPDGGMDIEAVAEKTPERIFKTPIDIQMGMT 184
Query: 639 DDQICRVIEKIGLQ-EFATEAHGMIKKMYDLFLKKDALLIEVNPYAEXA 782
+ Q ++ + + + + A IK++YDLF+ DA +E+NP E A
Sbjct: 185 EGQSLKIAKDLQFEGKLIGVAAQEIKRLYDLFIAVDATQVEINPLVETA 233
>AY204202-1|AAO39203.1| 339|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 339
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AY204201-1|AAO39202.1| 409|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 99 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 145
>AY204200-1|AAO39201.1| 304|Caenorhabditis elegans nuclear receptor
NHR-114 protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AF408754-1|AAO27833.1| 418|Caenorhabditis elegans nuclear receptor
protein protein.
Length = 418
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-11|AAQ91893.1| 304|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform b protein.
Length = 304
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>AC084155-10|AAG23368.3| 418|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 114, isoform a protein.
Length = 418
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 415 TKSCLSIFPAISPATSGVLTIRTPPLSPFLKVPFPRPPARTCAFRTMS 272
T C S A +P + L + PP+SP L P P R C +T++
Sbjct: 108 TSDCSSDEGASTPPSVSPLQLSPPPISPLLFQAAPLKP-RRCILQTLA 154
>Z74040-3|CAB54276.3| 246|Caenorhabditis elegans Hypothetical
protein K10D6.2c protein.
Length = 246
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 665 FDNTANLIISNTRNNIN 615
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-2|CAA98513.1| 287|Caenorhabditis elegans Hypothetical
protein K10D6.2b protein.
Length = 287
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 665 FDNTANLIISNTRNNIN 615
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z74040-1|CAA98514.2| 340|Caenorhabditis elegans Hypothetical
protein K10D6.2a protein.
Length = 340
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -2
Query: 665 FDNTANLIISNTRNNIN 615
FDN+A L+I NT NNI+
Sbjct: 79 FDNSAELVIQNTLNNID 95
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 558 GVNIEDVAAENPDAITYEP 614
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>U55376-2|AAA98004.1| 132|Caenorhabditis elegans C.elegans homeobox
protein 1 protein.
Length = 132
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -3
Query: 448 QIRPAAPVCFVTK-SCLSIFPAISPATSGVLTIRTPPLSPF 329
QI+P P +T S L + P ISPA S VL + PL+ F
Sbjct: 78 QIQPILPANPITSFSSLLLPPIISPANSAVLQGTSIPLTLF 118
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 558 GVNIEDVAAENPDAITYEP 614
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 27.9 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +3
Query: 558 GVNIEDVAAENPDAITYEP 614
G+ IE+VAA+ P TYEP
Sbjct: 372 GIKIEEVAAKYPSESTYEP 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,344,383
Number of Sequences: 27780
Number of extensions: 405032
Number of successful extensions: 1104
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -