Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C18
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   4.5  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   7.9  
SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr 1|||...    26   7.9  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 538 VFDCWSFWCNILRYEIDRYIGSR 606
           + DC  FW + LR+E+++ + S+
Sbjct: 459 LLDCRHFWISFLRFELEQPLNSK 481


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -2

Query: 747 SLTITVGRDSVSMLKCASALASAPMELKGLTSFSASLKSVCTSLS 613
           S TI     SVS+   +S + S+P+    LT+ S S  ++  S++
Sbjct: 541 STTIPTSNSSVSLQTSSSLIISSPIISSSLTATSTSTPALTHSIT 585


>SPAC144.10c |gwt1|mug59|pig-W|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 459

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -1

Query: 751 NFFNNNCWTRFSFNVEMCIGFSFCSNGTQGFNFVQCIIKIGMHFIKFYTL 602
           N F N  W  F   + + +GF+     T+  N+ + + + GMH+  F+TL
Sbjct: 186 NAFKNVLWNSF---ILLILGFARMFL-TKSINYQEHVSEYGMHWNFFFTL 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,692,147
Number of Sequences: 5004
Number of extensions: 46121
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)