Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C18
         (865 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting...    29   3.2  
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting...    29   3.2  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical pr...    28   9.9  

>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
            protein protein8, isoform b protein.
          Length = 1780

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 443  LAGRVASEDVAGNGFATAQAGGHNA---VSGLAGESSIAGASGVTFSGTKSIGISDQGVK 613
            LAG  +S   +G G + A +   +    +SG AG S  AG SG   S T      +   +
Sbjct: 1317 LAGPSSSRIQSGRGVSPALSASRSVAPTISGAAGRSITAGTSG--HSSTSDYN-KELAER 1373

Query: 614  LNEVHTDFNDALNEVKPLSSIGAEAKADAHFNIETE 721
            +NEV    +  L + K  S++ + A + A+ N   E
Sbjct: 1374 MNEVFKPTHPQLLQTK-ASAMNSNAVSPANTNNSDE 1408


>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
            protein protein8, isoform c protein.
          Length = 1697

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
 Frame = +2

Query: 443  LAGRVASEDVAGNGFATAQAGGHNA---VSGLAGESSIAGASGVTFSGTKSIGISDQGVK 613
            LAG  +S   +G G + A +   +    +SG AG S  AG SG   S T      +   +
Sbjct: 1234 LAGPSSSRIQSGRGVSPALSASRSVAPTISGAAGRSITAGTSG--HSSTSDYN-KELAER 1290

Query: 614  LNEVHTDFNDALNEVKPLSSIGAEAKADAHFNIETE 721
            +NEV    +  L + K  S++ + A + A+ N   E
Sbjct: 1291 MNEVFKPTHPQLLQTK-ASAMNSNAVSPANTNNSDE 1325


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 449 GRVASEDVAGNGFATAQAGGHNAVSGLAGESSIAGA-SGVTFSGTKS 586
           G+++    +GNG  T  A G  +  G  G ++ AGA SG+   G KS
Sbjct: 207 GQMSHSIDSGNGLTTPFASGFMSTLGGGGGAAAAGAKSGIMTPGWKS 253


>Z70036-5|CAO78725.1|  712|Caenorhabditis elegans Hypothetical
           protein T01B4.2c protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 673 GTQGFNFVQCIIKI-GMHFIKFYTLIRYTDRFRTGECYTRSSSNRRLTSQARNSIMTSCL 497
           G  G   +  ++KI G H IK+   +RY+ R     C+ RS   R  T ++  S    C 
Sbjct: 240 GLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCE 299

Query: 496 SS 491
            S
Sbjct: 300 ES 301


>Z70036-4|CAO78724.1|  733|Caenorhabditis elegans Hypothetical
           protein T01B4.2b protein.
          Length = 733

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 673 GTQGFNFVQCIIKI-GMHFIKFYTLIRYTDRFRTGECYTRSSSNRRLTSQARNSIMTSCL 497
           G  G   +  ++KI G H IK+   +RY+ R     C+ RS   R  T ++  S    C 
Sbjct: 261 GLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCE 320

Query: 496 SS 491
            S
Sbjct: 321 ES 322


>Z70036-3|CAA93876.1|  757|Caenorhabditis elegans Hypothetical
           protein T01B4.2a protein.
          Length = 757

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = -1

Query: 673 GTQGFNFVQCIIKI-GMHFIKFYTLIRYTDRFRTGECYTRSSSNRRLTSQARNSIMTSCL 497
           G  G   +  ++KI G H IK+   +RY+ R     C+ RS   R  T ++  S    C 
Sbjct: 285 GLIGIPLMLFVLKIFGEHSIKWAQKVRYSIRRCVKRCFRRSKLKRASTIESVASDEMPCE 344

Query: 496 SS 491
            S
Sbjct: 345 ES 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,396
Number of Sequences: 27780
Number of extensions: 264272
Number of successful extensions: 861
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)