Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C17
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.93 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     24   1.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.0  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   5.0  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.7  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.93
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 766 LVNLSEKDYIXKKNKWL 816
           L+N++EK+ I K N WL
Sbjct: 63  LINVNEKNQIMKSNVWL 79


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +1

Query: 511 VRD--LETIAEELRLKDEEQLLQHIEKLDRVVNRGGEK 618
           VRD  +  + +EL +   +++   + KLD ++ R G+K
Sbjct: 126 VRDHNISALCKELGISVVQKVSHTLYKLDEIIERNGDK 163


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +2

Query: 374 SCAALLKAKDWETPFCPTSKLVMLFLTCVVHSMMKTSSMLTV 499
           +CAAL +  +W  P+     LV L +  +V+ M+   ++L +
Sbjct: 50  ACAALYERVEWSGPWI----LVTLIVLAIVNVMVVLGNVLVI 87


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 300 IPFIRYRYPTLIRVDGA 250
           +PFI+  Y T+I+++GA
Sbjct: 352 LPFIKDIYETVIKLEGA 368


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -2

Query: 300 IPFIRYRYPTLIRVDGA 250
           +PFI+  Y T+I+++GA
Sbjct: 58  LPFIKDIYETVIKLEGA 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 387 SAAHETGYVYHVEESWH 337
           SAA ++GY+ + +  WH
Sbjct: 335 SAAIDSGYILNNDGKWH 351


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -2

Query: 387 SAAHETGYVYHVEESWH 337
           SAA ++GY+ + +  WH
Sbjct: 335 SAAIDSGYILNNDGKWH 351


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +1

Query: 475 EDVIHVDGDVNPVRDLETIAEELRLKDEEQLL 570
           ED+ H++   N    ++T+  E  + + EQ+L
Sbjct: 219 EDIKHINTRHNTKNGMKTLLSETDIWEVEQIL 250


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,435
Number of Sequences: 438
Number of extensions: 4250
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)