Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C16
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly sc...    30   0.33 
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    27   3.1  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   4.0  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    26   7.1  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   7.1  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   9.4  
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    25   9.4  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    25   9.4  

>SPAC227.13c |isu1||mitochondrial iron-sulfur cluster assembly
           scaffold protein Isu1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 192

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +3

Query: 555 NSTRFCPQVIANNSRRCLHK 614
           NS++F PQV AN SRR  HK
Sbjct: 37  NSSKFVPQVTANVSRRMYHK 56


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -1

Query: 685 VWILKQLGRWPQEKILSILTQNYLLCKH 602
           +W L ++ +W  EK++ ++  + L+ KH
Sbjct: 907 IWELTRIDKWFLEKLMGLIRTSQLISKH 934


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = -3

Query: 302 AKTPSTFTKGPNLPSKIPSTSNILVFGPIVPNNFTNNNQN 183
           A T S+    P +PS    TSN L   P  PN F N + +
Sbjct: 231 ALTSSSSILKPCMPSIASPTSNRLSHAPSTPNLFPNQDSS 270


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 472 QDLVRLLDREVPRISICVIASCSSLRLEIL 383
           ++ V L   +V    +C +A C SLR ++L
Sbjct: 83  ENTVELYAEKVQNRGLCAVAQCESLRYKLL 112


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
 Frame = +1

Query: 535  YAPGIDEIAQDFVHRLSQITHDDAYIKDNFELELTKFSLEATALVALGSRLGCLKDSLDS 714
            Y P I++ A D VHRL Q      Y    F   +TK ++E   +     +   +K++LDS
Sbjct: 822  YNPSIEDQAIDRVHRLGQQKPVTVY---RF---ITKDTIEERIVSVQRKKRQLVKEALDS 875

Query: 715  --DHPAHRLMK 741
              ++P  RL K
Sbjct: 876  NENNPLSRLDK 886


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 541 PGIDEIAQDFVHRLSQITHDDAYI 612
           P + E+A DFV R   +  DD +I
Sbjct: 411 PVVVELASDFVDRCPSVFRDDTFI 434


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/63 (25%), Positives = 24/63 (38%)
 Frame = +1

Query: 268 FGPLVKVDGVFARGTMLFLFEPDHFEQVYRAEEANPLRPGFQVLDYYRTQLRKSRYGGLH 447
           FG    V GV      +     DH  +V+R +  +P      VL  +   +   +Y    
Sbjct: 300 FGHTDNVLGVVVSENYIISSSRDHTARVWRLDATSPAEACMHVLRGHLASVNSVQYSSKT 359

Query: 448 GLI 456
           GLI
Sbjct: 360 GLI 362


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -3

Query: 335 SGSNKNNIVPLAKTPSTFTKGPNLPSKIPSTSNILVFGPIVPNNFTNNNQN 183
           S ++K N +      S  +    +P K    SN L F  +  NN  NNN N
Sbjct: 185 SNTSKPNPIVSENPISATSVSIEIPIKPKELSNNLPFPRLNNNNTNNNNDN 235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,280,183
Number of Sequences: 5004
Number of extensions: 71088
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)