Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C16
(790 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0074 + 582210-582434,582521-582712,582785-582950,584013-58... 31 0.79
07_03_1404 + 26329179-26329455,26329602-26330878 31 1.4
03_03_0098 + 14392509-14392748,14393116-14393196,14393517-143937... 30 1.8
01_07_0256 - 42328795-42329172,42330245-42330379,42330783-423310... 30 1.8
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278... 30 2.4
12_01_0075 + 622704-622937,623022-623213,623285-623450,624510-62... 29 3.2
10_08_0617 + 19291107-19292669 29 3.2
01_05_0037 - 17452503-17452523,17452594-17452689,17453315-174534... 29 4.2
12_01_0226 + 1715211-1716761 29 5.6
01_03_0223 + 13924231-13924510,13924670-13924893,13925482-139257... 29 5.6
12_01_0227 - 1718726-1721183,1721804-1721957,1722090-1722165,172... 28 7.4
11_01_0230 - 1788199-1789746 28 7.4
11_01_0228 + 1768318-1769871 28 7.4
04_01_0260 - 3506672-3508981 28 7.4
11_04_0257 - 15485612-15485734,15486822-15486898,15486909-15487065 28 9.7
07_03_1405 + 26340645-26340921,26341003-26341226,26341315-263415... 28 9.7
>11_01_0074 +
582210-582434,582521-582712,582785-582950,584013-584404
Length = 324
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -3
Query: 377 SGFASSALYTCSK*SGSNKNNIVPL-AKTPSTF 282
SGFA S C + SGS NN+ PL +TP+ F
Sbjct: 219 SGFAMSRQSGCPRSSGSGDNNLAPLDLQTPTVF 251
>07_03_1404 + 26329179-26329455,26329602-26330878
Length = 517
Score = 30.7 bits (66), Expect = 1.4
Identities = 24/81 (29%), Positives = 38/81 (46%)
Frame = +1
Query: 448 GLINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFE 627
GL+ G EW+ R V+PA + KL K+ + + AQ + S+ + D E
Sbjct: 141 GLVLTDGDEWKRHRKVVHPAFNMDKL-KMMTVTMSDCAQSMI---SEWESELGTKGDIVE 196
Query: 628 LELTKFSLEATALVALGSRLG 690
+EL++ E TA V + G
Sbjct: 197 IELSRRFEELTADVISHTAFG 217
>03_03_0098 +
14392509-14392748,14393116-14393196,14393517-14393767,
14393887-14394239,14394547-14394848
Length = 408
Score = 30.3 bits (65), Expect = 1.8
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 448 GLINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFE 627
GL+ +G +W R +NPA + K +K+ + AQ+ V L D A N E
Sbjct: 81 GLVLVEGIDWERHRRVINPAFTMDK-IKMMTKTMVACAQNMVKEL----EDQASSNKNGE 135
Query: 628 --LELTKFSLEATA 663
+EL K E TA
Sbjct: 136 TQVELDKQFQELTA 149
>01_07_0256 -
42328795-42329172,42330245-42330379,42330783-42331033,
42331290-42331341,42331619-42331647,42331812-42332105,
42332229-42332378,42333915-42334405,42334513-42334613,
42334941-42335037,42335882-42335950,42336036-42336122,
42336423-42336494,42336795-42336863,42337784-42337858,
42338230-42338301,42338378-42338449,42338533-42338676,
42339106-42339177,42339294-42339365,42339804-42339954,
42340204-42340297
Length = 1008
Score = 30.3 bits (65), Expect = 1.8
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = -3
Query: 272 PNLPSKIPSTSNILVFGPIVPNNFTNNNQNMHYYYYIMQALTDNAYEFATQIHVVHFCLK 93
PNL +I N + GPI P +F N N+ H++ E + +VH L
Sbjct: 149 PNL-DRIQIDQNY-ISGPI-PKSFANLNKTKHFHMNNNSLSGQIPPELSRLPSLVHLLLD 205
Query: 92 NTLETGYLPDLNNKI 48
N +GYLP +K+
Sbjct: 206 NNNLSGYLPPELSKL 220
>02_01_0385 +
2783387-2783695,2784149-2785082,2785206-2785309,
2785402-2785486,2785517-2787578,2787732-2787753,
2788157-2788327,2791473-2791517,2792558-2793874,
2793962-2794012,2794090-2794188,2794352-2794504,
2794554-2794571
Length = 1789
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -3
Query: 206 NFTNNNQNMHYYYYIMQALTDNAYE-FATQIHVVHF 102
N +N N HY+ + Q T +AY+ AT++ +HF
Sbjct: 481 NTKRDNLNFHYHLLLNQNETSSAYKSLATKVRALHF 516
>12_01_0075 +
622704-622937,623022-623213,623285-623450,624510-624901
Length = 327
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 377 SGFASSALYTCSK*SGSNKNNIVPL-AKTPSTF 282
SGFA C + SGS NN+ PL +TP+ F
Sbjct: 222 SGFAMRRQSGCPRNSGSGDNNLAPLDLQTPTVF 254
>10_08_0617 + 19291107-19292669
Length = 520
Score = 29.5 bits (63), Expect = 3.2
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +1
Query: 232 NMFDVLGILEGKFGPLVKVDGVFARGTMLFLFEPDHFEQVYRAEEANPLRPGFQVLDYYR 411
N+ +L L ++GP+V + G+ L +F D R A + G + D R
Sbjct: 57 NLEPLLQRLIARYGPVVSL----RVGSRLSIFVADR-----RVAHAALVERGAALAD--R 105
Query: 412 TQLRKSRYGGLHGLI--NAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLS 585
+ +S G I ++ GP WR R + L P V+L+AP + + V +L+
Sbjct: 106 PDVTRSLLGETGNTITRSSYGPVWRVLRRNLVAETLHPSRVRLFAPARSWVRRVLVDKLA 165
>01_05_0037 -
17452503-17452523,17452594-17452689,17453315-17453419,
17453699-17453869,17454309-17454378,17454698-17454879,
17457297-17457406,17458353-17458457,17458537-17458615,
17458722-17458762,17459019-17459097,17460620-17460814
Length = 417
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 430 RYGGLHGLINAQGPEWREFRTKVNPALLL 516
++GGLHG + Q P W+ F V P ++
Sbjct: 56 QHGGLHG--DVQAPTWKRFLAHVGPGFVI 82
>12_01_0226 + 1715211-1716761
Length = 516
Score = 28.7 bits (61), Expect = 5.6
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +1
Query: 445 HGLINAQGPEWREFRTKVNPALLLPKLVKLYAPGID-EIAQDFVHRLSQITHD----DAY 609
HGL N+ G +W R + L + + E+A F+ L + D D
Sbjct: 118 HGLFNSDGEQWLWQRKNASYEFSKRSLRRFVVDVVQAEVADRFLPLLRRAAGDGRGGDIV 177
Query: 610 IKDNFELELTKFSLEATALVALGSRLGCLKD 702
+ D E+ L +F + +VA G CL D
Sbjct: 178 VLDLQEV-LQRFGFDTICMVAFGHDPRCLAD 207
>01_03_0223 +
13924231-13924510,13924670-13924893,13925482-13925735,
13926041-13926422,13926938-13927369
Length = 523
Score = 28.7 bits (61), Expect = 5.6
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 448 GLINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHR-LSQITHDDAYIKDNF 624
GLI A G +W R V+PA KL K + + E + V R SQI +
Sbjct: 142 GLILANGEDWERHRKVVHPAFNHDKL-KFMSVVMAESVESMVQRWQSQIQQAG---NNQV 197
Query: 625 ELELTKFSLEATALVALGSRLG 690
EL+L++ E T+ V S G
Sbjct: 198 ELDLSRELSELTSDVITRSAFG 219
>12_01_0227 -
1718726-1721183,1721804-1721957,1722090-1722165,
1722327-1722485,1722552-1722662,1722791-1722841,
1722948-1723192,1723745-1725278
Length = 1595
Score = 28.3 bits (60), Expect = 7.4
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +1
Query: 445 HGLINAQGPEWREFRTKVNPALLLPKLVKLYAPGID-EIAQDFVHRLSQITHD----DAY 609
HGL N+ G +W R + L K + E+A + L + D DA
Sbjct: 117 HGLFNSDGEQWLWQRKNASYEFSKRSLRKFVVDVVQAEVANRLLPLLRRAAGDGVGGDAV 176
Query: 610 IKDNFELELTKFSLEATALVALGSRLGCLKD 702
+ D ++ L +F + +VA G CL D
Sbjct: 177 VLDLQDV-LQRFGFDTICMVAFGHDPRCLAD 206
>11_01_0230 - 1788199-1789746
Length = 515
Score = 28.3 bits (60), Expect = 7.4
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +1
Query: 445 HGLINAQGPEWREFRTKVNPALLLPKLVKLYAPGID-EIAQDFVHRLSQITHD----DAY 609
HGL N+ G +W R + L K + E+A + L + D DA
Sbjct: 117 HGLFNSDGEQWLWQRKNASYEFSKRSLRKFVVDVVQAEVANRLLPLLRRAAGDGVGGDAV 176
Query: 610 IKDNFELELTKFSLEATALVALGSRLGCLKD 702
+ D ++ L +F + +VA G CL D
Sbjct: 177 VLDLQDV-LQRFGFDTICMVAFGHDPRCLAD 206
>11_01_0228 + 1768318-1769871
Length = 517
Score = 28.3 bits (60), Expect = 7.4
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 6/92 (6%)
Frame = +1
Query: 445 HGLINAQGPEWREFRTKVNPALLLPKLVKLYAPGID-EIAQDFVHRLSQITHD-----DA 606
HGL N+ G +W R + L + + EIA F+ L + D D
Sbjct: 118 HGLFNSDGEQWLWQRKNASYEFSNRSLRRFVVDVVQAEIADRFLPLLRRAAGDGGGDGDV 177
Query: 607 YIKDNFELELTKFSLEATALVALGSRLGCLKD 702
+ D E+ L +F + +VA G CL D
Sbjct: 178 VVLDLQEV-LQRFGFDTICMVAFGHDPRCLAD 208
>04_01_0260 - 3506672-3508981
Length = 769
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 691 ILVWILKQLGRWPQEKILSILTQNYLLCKHRR 596
+L+W+ Q+ RW L I+T NY H R
Sbjct: 49 LLLWLANQIARWAPTAALGIIT-NYSTVAHGR 79
>11_04_0257 - 15485612-15485734,15486822-15486898,15486909-15487065
Length = 118
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/37 (29%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 135 ISVISKCLHYVVIIMHILVIVCKVVGYDWS--KNQYV 239
+ ++ + L ++ + H+L I+C V+ +WS KN++V
Sbjct: 82 VIILREHLVPLITVCHLLAIICHVLKIEWSPLKNKHV 118
>07_03_1405 +
26340645-26340921,26341003-26341226,26341315-26341562,
26341622-26342051,26342630-26343049
Length = 532
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 448 GLINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHR 579
GL+ A G EW+ + V+PA KL K+ + +A+ V R
Sbjct: 141 GLVLANGDEWQRHKKVVHPAFNTDKL-KMMTATMAGVARSMVSR 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,341,345
Number of Sequences: 37544
Number of extensions: 419435
Number of successful extensions: 1019
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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