Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C16
(790 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450... 54 1e-07
Z81503-2|CAB04112.1| 517|Caenorhabditis elegans Hypothetical pr... 32 0.54
L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human nie... 30 2.2
AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched relat... 30 2.2
AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched relat... 30 2.2
AF016449-15|AAG24002.1| 496|Caenorhabditis elegans Cytochrome p... 29 2.9
Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical pr... 29 5.0
AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical ... 29 5.0
Z81030-11|CAE17704.1| 100|Caenorhabditis elegans Hypothetical p... 28 6.6
Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z95623-2|CAB09134.1| 509|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z48717-9|CAA88611.1| 509|Caenorhabditis elegans Hypothetical pr... 28 8.8
Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical pr... 28 8.8
>U21321-2|AAG00050.1| 489|Caenorhabditis elegans Cytochrome p450
family protein 44A1 protein.
Length = 489
Score = 54.0 bits (124), Expect = 1e-07
Identities = 44/173 (25%), Positives = 79/173 (45%)
Frame = +1
Query: 265 KFGPLVKVDGVFARGTMLFLFEPDHFEQVYRAEEANPLRPGFQVLDYYRTQLRKSRYGGL 444
K+G +VK + F R ++ +F+P + V A+ P F V TQ + G
Sbjct: 72 KYGKIVKENLGFGRKYVVHIFDPADVQTVLAADGKTP----FIVPLQETTQKYREMKGMN 127
Query: 445 HGLINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNF 624
GL N GPEW R+ V A++ P+ V+ Y P ++ D V ++ + +
Sbjct: 128 PGLGNLNGPEWYRLRSSVQHAMMRPQSVQTYLPFSQIVSNDLVCHVAD--QQKRFGLVDM 185
Query: 625 ELELTKFSLEATALVALGSRLGCLKDSLDSDHPAHRLMKSTRDIFELTYKLEI 783
+ ++SLE+ + LG L + + A L++ + IF+L+ K+ +
Sbjct: 186 QKVAGRWSLESAGQILFEKSLGSLGNRSEW---ADGLIELNKKIFQLSAKMRL 235
>Z81503-2|CAB04112.1| 517|Caenorhabditis elegans Hypothetical
protein F14F7.2 protein.
Length = 517
Score = 31.9 bits (69), Expect = 0.54
Identities = 28/103 (27%), Positives = 46/103 (44%)
Frame = +1
Query: 451 LINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFEL 630
L +AQG W+ RT NP L K+ +++ A + + + Q T I D E
Sbjct: 116 LFSAQGHRWKRLRTIANPTFSSNNLRKIQVT-VEDSALELLRHIEQHTAGGKAI-DVLEY 173
Query: 631 ELTKFSLEATALVALGSRLGCLKDSLDSDHPAHRLMKSTRDIF 759
+F+++ +A+G DSL +P L+ RD+F
Sbjct: 174 -FQEFTMDVIGRIAMGQ-----PDSLMFKNP---LLPCARDVF 207
>L11247-2|AAK84521.1| 1274|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 2 protein.
Length = 1274
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Frame = -1
Query: 691 ILVWILKQLG--RWPQEKILSILTQNYLL 611
+L+W++ LG WP+ ILS L + LL
Sbjct: 597 VLIWVITMLGINHWPESSILSALVHHKLL 625
>AC006670-3|ABC71823.1| 350|Caenorhabditis elegans Patched related
family protein12, isoform b protein.
Length = 350
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 87 CIL*TKVDNVYLRCKFISVISKCLHYVVIIMHILVIV 197
C+L K ++Y+ C F+ + C+ ++ + H LV++
Sbjct: 291 CVLSLKFSSIYMSCAFVKTMITCM--ILCVFHALVLL 325
>AC006670-2|ABC71822.1| 901|Caenorhabditis elegans Patched related
family protein12, isoform a protein.
Length = 901
Score = 29.9 bits (64), Expect = 2.2
Identities = 10/37 (27%), Positives = 22/37 (59%)
Frame = +3
Query: 87 CIL*TKVDNVYLRCKFISVISKCLHYVVIIMHILVIV 197
C+L K ++Y+ C F+ + C+ ++ + H LV++
Sbjct: 842 CVLSLKFSSIYMSCAFVKTMITCM--ILCVFHALVLL 876
>AF016449-15|AAG24002.1| 496|Caenorhabditis elegans Cytochrome p450
family protein 33C9 protein.
Length = 496
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 352 YRAEEANPLRPGFQVLDYYRTQLRKSRYGGLHGLINAQGPEWREFR 489
Y A + ++ G D ++S GG +G++ GP WRE R
Sbjct: 77 YEALKETFIKDGETYADKKPMAFQESFRGGSYGVVETNGPFWREHR 122
>Z71264-6|CAC35821.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 386 PGRSGFASSALYTCSK*SGSNKNNIVPLAKTPSTFTKGPNLPSKIPSTSNILVFGP 219
P G AS + K S S K +VP+ TF LP K+ N LV P
Sbjct: 276 PSMQGVASQ-VQKIRKTSESGKVAVVPITDVIETFNTLYTLPKKVEHLKNALVLRP 330
>AL008986-1|CAC35820.1| 374|Caenorhabditis elegans Hypothetical
protein K07G5.6 protein.
Length = 374
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 23/56 (41%)
Frame = -3
Query: 386 PGRSGFASSALYTCSK*SGSNKNNIVPLAKTPSTFTKGPNLPSKIPSTSNILVFGP 219
P G AS + K S S K +VP+ TF LP K+ N LV P
Sbjct: 276 PSMQGVASQ-VQKIRKTSESGKVAVVPITDVIETFNTLYTLPKKVEHLKNALVLRP 330
>Z81030-11|CAE17704.1| 100|Caenorhabditis elegans Hypothetical
protein C01G10.15 protein.
Length = 100
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -3
Query: 212 PNNFTNNNQNMHYYYY 165
PNN NNN YYYY
Sbjct: 46 PNNNNNNNNGQTYYYY 61
>Z22181-1|CAA80179.1| 710|Caenorhabditis elegans Hypothetical
protein ZK632.2 protein.
Length = 710
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +1
Query: 361 EEANPLRPGFQVLDYYRTQLRKSRYGGLHGLINAQGPEWRE-FRTKVNPALLLPKLVKLY 537
+++ + G VLD Y QL KS G + +WR+ + + L KLVK+
Sbjct: 442 KKSRTIDQGGDVLDDYIRQLEKSGGAGDDAKTKMEKSKWRQKLMAATHESQKLEKLVKIA 501
Query: 538 APGI 549
P +
Sbjct: 502 KPAV 505
>Z95623-2|CAB09134.1| 509|Caenorhabditis elegans Hypothetical
protein T10B9.4 protein.
Length = 509
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/76 (21%), Positives = 37/76 (48%)
Frame = +1
Query: 451 LINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFEL 630
++ AQG W+ RT PA + K+ +++ Q+ + +L + + + + N L
Sbjct: 112 IVGAQGFRWKRLRTITAPAFSNGSIKKVLTT-MEDSTQELMKKLREESENGKAV--NMHL 168
Query: 631 ELTKFSLEATALVALG 678
+++ + + VA+G
Sbjct: 169 FYQEYTFDVISRVAMG 184
>Z48717-9|CAA88611.1| 509|Caenorhabditis elegans Hypothetical
protein T10B9.4 protein.
Length = 509
Score = 27.9 bits (59), Expect = 8.8
Identities = 16/76 (21%), Positives = 37/76 (48%)
Frame = +1
Query: 451 LINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFEL 630
++ AQG W+ RT PA + K+ +++ Q+ + +L + + + + N L
Sbjct: 112 IVGAQGFRWKRLRTITAPAFSNGSIKKVLTT-MEDSTQELMKKLREESENGKAV--NMHL 168
Query: 631 ELTKFSLEATALVALG 678
+++ + + VA+G
Sbjct: 169 FYQEYTFDVISRVAMG 184
>Z48717-3|CAA88606.1| 520|Caenorhabditis elegans Hypothetical
protein T10B9.5 protein.
Length = 520
Score = 27.9 bits (59), Expect = 8.8
Identities = 18/76 (23%), Positives = 36/76 (47%)
Frame = +1
Query: 451 LINAQGPEWREFRTKVNPALLLPKLVKLYAPGIDEIAQDFVHRLSQITHDDAYIKDNFEL 630
L+ +QG W+ RT +P L K+++ ++E + + L + T I D E
Sbjct: 117 LVTSQGHRWKRLRTLASPTFSNKSLRKIFST-VEESVAEMMRHLEKGTAGGKTI-DILEY 174
Query: 631 ELTKFSLEATALVALG 678
+F+++ +A+G
Sbjct: 175 -YQEFTMDIIGKIAMG 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,007,586
Number of Sequences: 27780
Number of extensions: 397151
Number of successful extensions: 1089
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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