Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C13
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...   131   1e-31
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    29   0.89 
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    28   1.6  
SPBC36.03c |||spermidine family transporter |Schizosaccharomyces...    27   2.7  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    26   6.3  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   8.3  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score =  131 bits (316), Expect = 1e-31
 Identities = 65/157 (41%), Positives = 96/157 (61%), Gaps = 2/157 (1%)
 Frame = +1

Query: 286 ASVKDTKEIEDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENP 465
           +  K    I +F F  TM R+KDP  +I FY   LGM ++ +   P  KF+ +F+ Y  P
Sbjct: 154 SETKPKANISNFRFNHTMVRVKDPEPSIAFYEK-LGMKVIDKADHPNGKFTNYFLAY--P 210

Query: 466 AEVPRDDDARTKWAMTRKATLELTYNWGTESDDSS-YHNGNS-DPRGFGHIGILVPDVDV 639
           +++PR D         R+  LELT+NWGTE +    YHNGN  D +G+GH+ I V +++ 
Sbjct: 211 SDLPRHD---------REGLLELTHNWGTEKESGPVYHNGNDGDEKGYGHVCISVDNINA 261

Query: 640 ACARFEQLGVKFIKRPNDGKMKGLAFIQDPDGYWIEI 750
           AC++FE  G+ F K+  DG+MK +AF+ DPD YW+E+
Sbjct: 262 ACSKFEAEGLPFKKKLTDGRMKDIAFLLDPDNYWVEV 298



 Score =  127 bits (307), Expect = 2e-30
 Identities = 67/156 (42%), Positives = 95/156 (60%), Gaps = 2/156 (1%)
 Frame = +1

Query: 301 TKEIEDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPR 480
           T ++  +    TM R+KD  K++ FYT V GM L+ Q  F   +FSL F+ ++ P  +  
Sbjct: 4   TTDMSTYKLNHTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEENEFSLSFLAFDGPGALNH 63

Query: 481 DDDARTKWAMTRKATLELTYNWGTESDDSS-YHNGNSDP-RGFGHIGILVPDVDVACARF 654
             + R+K    R+  LELTYN+GTE  +   Y NGN++P RGFGHI   V +++ ACA  
Sbjct: 64  GVE-RSK----REGILELTYNFGTEKKEGPVYINGNTEPKRGFGHICFTVDNIESACAYL 118

Query: 655 EQLGVKFIKRPNDGKMKGLAFIQDPDGYWIEIFTSN 762
           E  GV F K+ +DGKMK +AF  DPD YWIE+ + +
Sbjct: 119 ESKGVSFKKKLSDGKMKHIAFALDPDNYWIELVSQS 154


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -2

Query: 543 VICQFQCGFPSHGPFSSGVIVSRYFGWILITHKEQRKLHCWKMQLL 406
           V+  F C   + G  S G+I  +   ++L T+K +  +  W+ Q+L
Sbjct: 514 VVIYFTCPPKNWGDVSQGIIYHQLRKYLLQTNKARENIKFWRPQIL 559


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/64 (23%), Positives = 28/64 (43%)
 Frame = +1

Query: 427 MKFSLFFMGYENPAEVPRDDDARTKWAMTRKATLELTYNWGTESDDSSYHNGNSDPRGFG 606
           ++F + +   + P  +PR  D+  +     ++  E    W   +  S Y  GNS+P+   
Sbjct: 33  LEFWVVYRPKDVPPNLPRQPDSWLRLCSNIESHDETDTEWSKNTQWSMYLEGNSEPKRED 92

Query: 607 HIGI 618
             GI
Sbjct: 93  KCGI 96


>SPBC36.03c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
 Frame = -2

Query: 546 PVICQFQC---GFPSHGPFSSGVIVSRYFGW 463
           P +C F C     P  GP + G +   Y GW
Sbjct: 222 PAVCIFACITFAGPLIGPIAGGFLAKSYLGW 252


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 540 ICQFQCGFPSHGPFSSGVIVSRYFGWILI-TH 448
           +C    G P+ G  SS + +SRY  W+ + TH
Sbjct: 10  LCVCFVGLPASGKTSSAMKLSRYLTWMSVSTH 41


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 801 YTGIFQYSAHSNNITCEYFYPV 736
           +T I++++  ++N+T E+FY V
Sbjct: 149 FTSIYRWNVTNSNVTIEHFYNV 170


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,942,901
Number of Sequences: 5004
Number of extensions: 87168
Number of successful extensions: 215
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)