Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C13
(895 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0361 - 12961101-12961201,12961683-12961772,12961910-129619... 209 2e-54
02_02_0449 - 10377835-10377876,10377977-10378117,10378230-103783... 66 3e-11
05_03_0055 - 7863410-7863530,7864205-7864314,7864341-7864553,786... 66 5e-11
08_01_0610 - 5367271-5367312,5367737-5367805,5368208-5368360,536... 55 9e-08
07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478 35 0.076
01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888 35 0.076
05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710 35 0.10
09_04_0517 - 18253325-18253870,18254209-18254781,18254888-182551... 32 0.54
09_04_0518 - 18261420-18261953,18262054-18262626,18262736-182629... 31 0.94
12_01_0762 + 6915299-6915532,6916043-6916220,6916490-6916656,691... 29 5.0
05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517 29 5.0
12_01_0764 + 6934570-6934726,6935150-6935316,6935408-6935490,693... 29 6.6
11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259 28 8.7
04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966 28 8.7
>05_03_0361 -
12961101-12961201,12961683-12961772,12961910-12961980,
12962079-12962158,12962264-12962324,12963620-12963681,
12963826-12963833,12964273-12964609,12964946-12965089,
12965235-12965339
Length = 352
Score = 209 bits (511), Expect = 2e-54
Identities = 91/144 (63%), Positives = 115/144 (79%), Gaps = 2/144 (1%)
Frame = +1
Query: 337 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 516
M+R+KDP+ ++ FY+ V+GM+LLK+L FP MKFSL+F+GYE+ P D RT W +
Sbjct: 199 MFRVKDPKVSLDFYSRVMGMSLLKRLDFPEMKFSLYFLGYEDVESAPTDPVKRTVWTFGQ 258
Query: 517 KATLELTYNWGTESDDS--SYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN 690
+ATLELT+NWGTE+D YHNGNSDPRGFGHIG+ V DV AC RFE+LGV+F+K+P+
Sbjct: 259 RATLELTHNWGTENDPEFKGYHNGNSDPRGFGHIGVTVHDVYKACERFERLGVEFVKKPD 318
Query: 691 DGKMKGLAFIQDPDGYWIEIFTSN 762
DGKMKG+AFI+DPDGYWIEIF N
Sbjct: 319 DGKMKGIAFIKDPDGYWIEIFDLN 342
>02_02_0449 -
10377835-10377876,10377977-10378117,10378230-10378337,
10378418-10378465,10378568-10378780,10378905-10378969,
10379092-10379216,10379332-10379524,10379621-10379723
Length = 345
Score = 66.5 bits (155), Expect = 3e-11
Identities = 50/142 (35%), Positives = 66/142 (46%), Gaps = 4/142 (2%)
Frame = +1
Query: 337 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 516
+YR+ D +TI FYT LGM LL++ P K++ F+GY A
Sbjct: 88 VYRVGDIDRTIKFYTECLGMKLLRKRDIPEEKYTNAFLGYG---------------AEDN 132
Query: 517 KATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 696
+ELTYN+G + D GFGH GI V DV G K + P G
Sbjct: 133 HFVVELTYNYGVDKYDIG--------AGFGHFGIAVDDVAKTVELIRAKGGKVTREP--G 182
Query: 697 KMKG----LAFIQDPDGYWIEI 750
+KG +AF++DPDGY EI
Sbjct: 183 PVKGGKTVIAFVEDPDGYKFEI 204
Score = 48.8 bits (111), Expect = 6e-06
Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 2/147 (1%)
Frame = +1
Query: 331 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 510
Q M R+ + + I FY GM LL++ P K+++ MGY P D
Sbjct: 216 QVMLRVGNLDRAISFYEKACGMELLRKRDNPEYKYTVAMMGYG-----PED--------- 261
Query: 511 TRKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN 690
+ A LELTYN+G + Y GN+ + I I DV + G + ++ P
Sbjct: 262 -KNAVLELTYNYGV----TEYDKGNA----YAQIAIGTDDVYKTAEVVKLFGGQVVREPG 312
Query: 691 --DGKMKGLAFIQDPDGYWIEIFTSNV 765
G + I DPDG W +F N+
Sbjct: 313 PLPGINTKITSILDPDG-WKSVFVDNI 338
>05_03_0055 -
7863410-7863530,7864205-7864314,7864341-7864553,
7865342-7865406,7865511-7865635,7865936-7866164,
7866270-7866348
Length = 313
Score = 65.7 bits (153), Expect = 5e-11
Identities = 52/142 (36%), Positives = 69/142 (48%), Gaps = 4/142 (2%)
Frame = +1
Query: 337 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 516
+YR+ D KTI FYT LGM LL++ P +++ F+GY P D
Sbjct: 92 VYRVGDLDKTIKFYTECLGMKLLRKRDIPEERYTNAFLGYG-----PEDSHF-------- 138
Query: 517 KATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 696
+ELTYN+G ES Y G + FGH GI V DV + G + P G
Sbjct: 139 --VVELTYNYGVES----YDIGTA----FGHFGIAVEDVAKTVDLIKAKGGTVTREP--G 186
Query: 697 KMKG----LAFIQDPDGYWIEI 750
+KG +AFI+DPDGY E+
Sbjct: 187 PVKGGKSVIAFIEDPDGYKFEL 208
>08_01_0610 -
5367271-5367312,5367737-5367805,5368208-5368360,
5368441-5368548,5368689-5368736,5368868-5369083,
5369195-5369259,5369478-5369602,5369675-5369793
Length = 314
Score = 54.8 bits (126), Expect = 9e-08
Identities = 48/142 (33%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Frame = +1
Query: 337 MYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAMTR 516
+YR+ D +TI YT GM LL++ P K++ F+G+ P D T +A
Sbjct: 29 VYRVGDLDRTIKCYTECFGMKLLRKRDVPEEKYTNAFLGFG-----PED----TNFA--- 76
Query: 517 KATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPNDG 696
LELTYN+G + D GFGH I DV + + I R G
Sbjct: 77 ---LELTYNYGVDKYDIG--------AGFGHFAIATEDVYKLAEKIKSSCCCKITR-EPG 124
Query: 697 KMKG----LAFIQDPDGYWIEI 750
+KG +AF QDPDGY E+
Sbjct: 125 PVKGGSTVIAFAQDPDGYMFEL 146
Score = 48.8 bits (111), Expect = 6e-06
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 6/146 (4%)
Frame = +1
Query: 331 QTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYENPAEVPRDDDARTKWAM 510
Q M R+ D ++I FY LGM LL++ P K+++ +GY D+D T
Sbjct: 158 QVMLRVGDLDRSIKFYEKALGMKLLRKKDVPDYKYTIAMLGY-------ADEDKTT---- 206
Query: 511 TRKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFE----QLGVKFI 678
+ELTYN+G + Y GN+ + + I DV + E +LG K +
Sbjct: 207 ----VIELTYNYGV----TEYTKGNA----YAQVAIGTEDVYKSAEAVELVTKELGGKIL 254
Query: 679 KRPN--DGKMKGLAFIQDPDGYWIEI 750
++P G +A DPDG+ + I
Sbjct: 255 RQPGPLPGLNTKIASFLDPDGWKVHI 280
>07_03_1545 - 27599605-27599859,27600012-27600123,27600216-27600478
Length = 209
Score = 35.1 bits (77), Expect = 0.076
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Frame = +1
Query: 580 GNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRP---NDGKMKGLAFIQDPDGYWIEI 750
G+ DP HI D+ + R ++G++++KR +G F +DPDG+ IEI
Sbjct: 113 GDLDPMD-NHISFQCEDMGMMEKRLNEMGIEYMKRTINEEEGSPIDQLFFKDPDGFMIEI 171
>01_01_0516 + 3778891-3779069,3779436-3779541,3780526-3780888
Length = 215
Score = 35.1 bits (77), Expect = 0.076
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Frame = +1
Query: 553 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 726
E +S N +P+ HI ++ R +++GV++++R G F D
Sbjct: 74 EDPESMPPNKEINPKD-NHISFTCESMEAVQRRLKEMGVRYVQRRVEEGGVYVDQIFFHD 132
Query: 727 PDGYWIEIFT 756
PDG+ IEI T
Sbjct: 133 PDGFMIEICT 142
>05_03_0054 - 7860359-7860403,7861222-7861362,7861618-7861710
Length = 92
Score = 34.7 bits (76), Expect = 0.10
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 514 RKATLELTYNWGTESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKRPN- 690
+ A LELTYN+G + Y GN+ + I I DV Q G + + P
Sbjct: 8 KNAVLELTYNYGVK----EYDKGNA----YAQIAISTDDVYKTAEVIRQNGGQITREPGP 59
Query: 691 -DGKMKGLAFIQDPDGYWIEIFTSNV 765
G + DPDG W +F NV
Sbjct: 60 LPGINTKITACTDPDG-WKTVFVDNV 84
>09_04_0517 -
18253325-18253870,18254209-18254781,18254888-18255100,
18255554-18255685,18255804-18255944,18256104-18256325
Length = 608
Score = 32.3 bits (70), Expect = 0.54
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 205 GIFQPSGCLVVGSGVWHRASISCGEI 128
G+ GCL +G+G +HR I CG I
Sbjct: 241 GLDSVGGCLYIGTGCFHRREILCGRI 266
>09_04_0518 -
18261420-18261953,18262054-18262626,18262736-18262948,
18263379-18263510,18263591-18263731,18263899-18264120
Length = 604
Score = 31.5 bits (68), Expect = 0.94
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 205 GIFQPSGCLVVGSGVWHRASISCGE 131
G+ GCL +G+G +HR I CG+
Sbjct: 241 GLDSAGGCLYIGTGCFHRREILCGK 265
>12_01_0762 +
6915299-6915532,6916043-6916220,6916490-6916656,
6916770-6916852,6916940-6917318
Length = 346
Score = 29.1 bits (62), Expect = 5.0
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 331 QTMYRIKDPRKTIPFYTGVLGM 396
++++RI P+ + +YTG+LGM
Sbjct: 118 ESLFRINHPKLPLSYYTGILGM 139
>05_01_0508 + 4242705-4242886,4243129-4243234,4246179-4246517
Length = 208
Score = 29.1 bits (62), Expect = 5.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +1
Query: 553 ESDDSSYHNGNSDPRGFGHIGILVPDVDVACARFEQLGVKFIKR--PNDGKMKGLAFIQD 726
E DS +P+ HI + R ++LG+ +I+R G F D
Sbjct: 75 EDPDSLPGKTEINPKD-NHISFQCESMVAVERRLKELGIPYIQRCVEEGGIYVDQIFFHD 133
Query: 727 PDGYWIEI 750
PDG+ IEI
Sbjct: 134 PDGFMIEI 141
>12_01_0764 +
6934570-6934726,6935150-6935316,6935408-6935490,
6935588-6935966
Length = 261
Score = 28.7 bits (61), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 331 QTMYRIKDPRKTIPFYTGVLGM 396
+T+++I P + +YTG+LGM
Sbjct: 33 ETLFKINHPELPLSYYTGILGM 54
>11_02_0101 - 8306468-8307099,8307227-8307404,8307990-8308259
Length = 359
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +1
Query: 331 QTMYRIKDPRKTIPFYTGVLGMT 399
+T+++I P + +YTGVLG+T
Sbjct: 130 ETLHKINHPDLPLSYYTGVLGVT 152
>04_03_0604 - 17916482-17917659,17918121-17918291,17919015-17919966
Length = 766
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 239 SLASTCLAGQARNFPAFRMLGSGIRRLA 156
SLAS CLA + + P R + +RRLA
Sbjct: 685 SLASQCLANPSSSRPTMRQVAEQLRRLA 712
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,775,093
Number of Sequences: 37544
Number of extensions: 542030
Number of successful extensions: 1164
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1155
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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