Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C13
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical ...    30   1.9  
AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical ...    30   2.6  

>AF106575-4|AAC78172.2|  548|Caenorhabditis elegans Hypothetical
           protein K04F1.13 protein.
          Length = 548

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 280 GNASVKDTKEIEDFMFQQTMYRIKDPRKTIPFYTGVLGMTLLKQLHFPAMKFSLFFMGYE 459
           G+ +++DTK +ED  F + + ++   +         L  + LK + FP MK   F + +E
Sbjct: 370 GSFTIEDTKYLEDLTFLKHLEQVVGLKMDSGPIVRFLSNSALKNVKFPIMKRPPFQINHE 429

Query: 460 NPAEV 474
              E+
Sbjct: 430 PVIEI 434


>AF047652-6|AAC04390.3|  397|Caenorhabditis elegans Hypothetical
           protein C34H4.1 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -3

Query: 866 KTLDKYRHFVGTVGLMSGFPCXTPVSFNTAHIQTTLLVNIS 744
           KTLD+ +  V   G  +GFP  + ++ +TA+ Q T  VN+S
Sbjct: 69  KTLDQLQANVDANGFQNGFPVNSDLTISTANSQDT-TVNLS 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,600,006
Number of Sequences: 27780
Number of extensions: 483598
Number of successful extensions: 1060
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)