Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C12
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    27   4.1  
SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol pyrop...    26   7.2  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +3

Query: 621 HRSTVGISRIPGWRLVLPFLQKLFSDLLLNDNQVFFLINKVTLFVNKSHAITAKV*INTF 800
           ++S V +  I  + L L FL+ +    ++     FFL N++ L     +     + I+TF
Sbjct: 373 YKSLVDLKTIDSFSLKLLFLKFMICSCMVKGESNFFLDNRIFLLERIMNRYGIPMTIDTF 432

Query: 801 L 803
           L
Sbjct: 433 L 433


>SPBC530.12c |pdf1||palmitoyl protein thioesterase-dolichol
           pyrophosphate phosphatase fusion 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 4/113 (3%)
 Frame = +3

Query: 357 YGIAAPYGIAAPYTAYGAYGVAPYGLGVHAW*TDHDREPLFSNISYAKIACFFFNSRYY* 536
           YG+   YG+ + ++ +  +    +   + AW   + R   FS +S+AK A +   S +  
Sbjct: 468 YGVG--YGMPSSHSQFMGF----FSAYMIAWDYKYRRSQCFSMLSFAKYAIYLTLSTFVC 521

Query: 537 ITLHDRPCQLLNALVIDNVVP-GVGRVW*HRSTVGISRIPG---WRLVLPFLQ 683
            + +      L  +V   ++  GVG  W +   VG  R  G   W L LP LQ
Sbjct: 522 SSRYLLDFHYLTQVVYGYMIGFGVGLFWVY--LVGKLRSLGVTKWLLSLPPLQ 572


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,152,988
Number of Sequences: 5004
Number of extensions: 34140
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)