Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C12
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    33   0.20 
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549...    31   0.82 
01_05_0438 + 22142646-22143659,22144319-22144858                       31   1.1  
05_02_0018 + 5626122-5626200,5626683-5626709,5626972-5627042,562...    30   2.5  
04_03_0252 - 13517763-13517861,13518845-13519315,13519400-135196...    30   2.5  
07_01_0180 + 1266975-1267550                                           29   5.8  
03_05_0267 - 22538631-22539452                                         28   7.6  

>03_05_0816 + 27928812-27930059,27931007-27931111,27931197-27931262,
            27931337-27931501,27931671-27931745,27931829-27931983,
            27932234-27932369,27932454-27932523,27932602-27932729,
            27932838-27932894,27933326-27933511,27934031-27934123,
            27934488-27934573,27934668-27934734,27934873-27934939,
            27935016-27935152,27935618-27935709,27935849-27935915,
            27936058-27936078
          Length = 1006

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +3

Query: 522  SRYY*ITLHDRPCQLLNALVIDNVVPGVGRV-W*HRSTVGISR-IPGWRLVLPFLQKLFS 695
            SR Y +  H     L NA+  DN V  +G++   HR  +  S+ +P W   LP    L  
Sbjct: 905  SRLYNVIKHPNALDLDNAMAYDNAVSALGKICQFHRDGIDASQVVPAWLSCLPIKNDLIE 964

Query: 696  DLLLND 713
              ++++
Sbjct: 965  AKIVHE 970


>02_05_0157 -
           26353971-26354336,26354645-26354726,26354838-26354933,
           26355365-26356068
          Length = 415

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = -3

Query: 467 AVVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 333
           A V+GL      AV G  V A+ GVG G S   G A GG   G G
Sbjct: 43  AGVLGLIGETVGAVVGATVGAVDGVGAGASAGGGVAGGGGVAGGG 87


>01_05_0438 + 22142646-22143659,22144319-22144858
          Length = 517

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 425 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 333
           GGD+V+ + GVG GD    GD IG   +G G
Sbjct: 377 GGDSVTVVQGVGDGDG--GGDGIGRGRKGSG 405


>05_02_0018 +
           5626122-5626200,5626683-5626709,5626972-5627042,
           5627123-5627248,5627726-5627755
          Length = 110

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 455 GLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGGSDQ 342
           G  S DAE+ GG    A+ G GRG    CG++ G  ++
Sbjct: 62  GGASHDAESEGGGMRWALVGEGRGSCAACGESGGEGER 99


>04_03_0252 -
           13517763-13517861,13518845-13519315,13519400-13519679,
           13519747-13519829
          Length = 310

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -3

Query: 431 AVGGDAVSAISGVGRG-DSVRCGDAIGGSDQGRG 333
           AVGGDA +A++G G G  ++  G   GG D   G
Sbjct: 57  AVGGDAAAAVAGSGGGMTTMMMGGGGGGGDDAGG 90


>07_01_0180 + 1266975-1267550
          Length = 191

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -3

Query: 464 VVIGLPSVDAEAVGGDAVSAISGVGRGDSVRCGDAIGG 351
           V  GL  VDA A G D V++ +  G    V  GD  GG
Sbjct: 12  VGFGLFGVDAAAFGYDGVASDAAAGLSPVVGAGDGSGG 49


>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 425 GGDAVSAISGVGRGDSVRCGDAIGGSDQGRG 333
           GG +    SG G  D   CGD  GG + G G
Sbjct: 135 GGSSGGEGSGGGSSDGEGCGDGSGGGELGGG 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,823,330
Number of Sequences: 37544
Number of extensions: 250530
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)