Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C11
(874 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 219 8e-56
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 208 2e-52
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 194 2e-48
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 175 2e-42
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 163 7e-39
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 130 3e-29
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 93 6e-18
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 3e-17
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 91 4e-17
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 88 2e-16
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 82 2e-14
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 79 1e-13
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 77 8e-13
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 77 8e-13
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 74 4e-12
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 74 5e-12
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 72 2e-11
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 71 4e-11
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 70 9e-11
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 69 1e-10
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 67 6e-10
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 64 3e-09
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 62 1e-08
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 1e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.083
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 36 1.8
UniRef50_O82487 Cluster: T12H20.10 protein; n=15; Magnoliophyta|... 35 2.3
UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1; ... 35 2.3
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 4.1
UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1; ... 34 5.4
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 34 5.4
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 9.5
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 219 bits (535), Expect = 8e-56
Identities = 94/117 (80%), Positives = 109/117 (93%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPG
Sbjct: 5 KFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKN
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKN 121
Score = 124 bits (300), Expect = 2e-27
Identities = 54/84 (64%), Positives = 67/84 (79%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K +EKDF M +YC V+RVIAHTQM+LL RQKKAH+MEIQ+NGGT+ +K+ W
Sbjct: 137 WQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A E LE+ +PV+ VF Q EMID I
Sbjct: 197 ARERLEQQVPVNQVFGQDEMIDVI 220
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 208 bits (507), Expect = 2e-52
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 52.4 bits (120), Expect = 1e-05
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 664
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 194 bits (474), Expect = 2e-48
Identities = 84/117 (71%), Positives = 102/117 (87%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 5 KFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+
Sbjct: 65 LKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKD 121
Score = 120 bits (289), Expect = 5e-26
Identities = 54/84 (64%), Positives = 65/84 (77%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
W+D G+K ++KDF M +YC V+RVI HTQMKLL RQKKAHIMEIQLNGGT+ +KV W
Sbjct: 137 WRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A LEK +PV SVF+Q E+ID I
Sbjct: 197 AQARLEKQVPVHSVFSQSEVIDVI 220
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 175 bits (425), Expect = 2e-42
Identities = 76/117 (64%), Positives = 95/117 (81%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPG
Sbjct: 56 KFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPG 115
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKN
Sbjct: 116 SKVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKN 172
Score = 70.5 bits (165), Expect = 5e-11
Identities = 34/80 (42%), Positives = 50/80 (62%), Gaps = 3/80 (3%)
Frame = +2
Query: 584 GRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQ---KKAHIMEIQLNGGTIEDKVKWAX 754
GR + + K + ++RV+AHTQ++ L+ + KKAH+ EIQ+NGGTI K++ A
Sbjct: 193 GRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAK 252
Query: 755 EHLEKPIPVDSVFAQXEMID 814
LEK + +DSVF Q E D
Sbjct: 253 SLLEKEVRIDSVFQQSEACD 272
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 163 bits (395), Expect = 7e-39
Identities = 73/116 (62%), Positives = 90/116 (77%)
Frame = +2
Query: 38 FSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217
FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP S
Sbjct: 6 FSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPES 65
Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
K+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKN
Sbjct: 66 KMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKN 121
Score = 62.9 bits (146), Expect = 1e-08
Identities = 25/48 (52%), Positives = 37/48 (77%)
Frame = +2
Query: 578 ELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNG 721
++G++ +E +FK M +YC V+ ++AHTQM LL QKKAH+MEIQ+ G
Sbjct: 134 DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQVMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 130 bits (315), Expect = 3e-29
Identities = 61/108 (56%), Positives = 82/108 (75%), Gaps = 3/108 (2%)
Frame = +2
Query: 80 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 259
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 260 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR---RFYKNCSP 394
ET P + VG VG ET GL+ +V+A+H+S +C+R ++ N SP
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIKYKTNTSP 108
Score = 45.6 bits (103), Expect = 0.002
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +2
Query: 650 AHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVF 793
A TQM LL QKKAH+ E Q+N G + K+ WA + LE+ +PV+ +F
Sbjct: 121 ALTQMCLLPLCQKKAHLTESQVNRGPVA-KLDWAHKKLEQQVPVNHIF 167
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 93.5 bits (222), Expect = 6e-18
Identities = 55/115 (47%), Positives = 70/115 (60%), Gaps = 2/115 (1%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
K APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG
Sbjct: 5 KKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPG 63
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRR 373
+ KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 64 RPTSGKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRR 118
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 91.5 bits (217), Expect = 3e-17
Identities = 45/99 (45%), Positives = 62/99 (62%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 227 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWA 343
E+ +AVT++E PPM + V GY TP+G + WA
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA 104
Score = 36.3 bits (80), Expect = 1.0
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 638 VRVIAHTQM-KLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMID 814
VR+I +Q K+ K IME+ L GG + ++ WA E L + + ++ VF ID
Sbjct: 143 VRLIVSSQPDKVSAVGSKSPEIMEMGLTGGDLGAQLDWAAEKLGEELGIEDVFESGSDID 202
Query: 815 CI 820
I
Sbjct: 203 VI 204
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 90.6 bits (215), Expect = 4e-17
Identities = 42/103 (40%), Positives = 66/103 (64%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 227 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS 355
+EI +AVT++E PPM + V GY TP+G++ +WA+ S
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSS 108
Score = 39.5 bits (88), Expect = 0.11
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +2
Query: 638 VRVIAHTQMKLLKQRQKKAH-IMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMID 814
VR+I TQ L+K K IME+ L GG K++WA E L I +D V+ + +D
Sbjct: 163 VRLIVATQPALVKSVPSKTPVIMEVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELD 222
Query: 815 CI 820
+
Sbjct: 223 VV 224
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 88.2 bits (209), Expect = 2e-16
Identities = 46/108 (42%), Positives = 59/108 (54%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 227 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 370
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 82.2 bits (194), Expect = 2e-14
Identities = 39/100 (39%), Positives = 56/100 (56%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 227 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 346
+EI VTI++ PPM + Y TP G R + WAE
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAE 108
Score = 39.5 bits (88), Expect = 0.11
Identities = 19/59 (32%), Positives = 33/59 (55%)
Frame = +2
Query: 638 VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMID 814
+RVI TQ K +KK +ME ++ G + ++ ++A E L + I VF + E++D
Sbjct: 145 IRVIVATQPKKAGVPKKKPDVMEYRIGGKDVRERFEYAVEILSEEIRAKDVFDEGEIVD 203
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 79.4 bits (187), Expect = 1e-13
Identities = 47/104 (45%), Positives = 60/104 (57%), Gaps = 2/104 (1%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
K APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 5 KKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREH 61
Query: 215 SKINKKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW 340
+EI VT+IETPPMV +G V GY + G AL VW
Sbjct: 62 VDTAGQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVW 104
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 76.6 bits (180), Expect = 8e-13
Identities = 40/110 (36%), Positives = 58/110 (52%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 227 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 376
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF 112
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 76.6 bits (180), Expect = 8e-13
Identities = 39/88 (44%), Positives = 54/88 (61%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG 59
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGY 298
N KEI VTIIETPP+ G+ Y
Sbjct: 60 -LTNGKEIFMPVTIIETPPLRVFGIRAY 86
Score = 39.9 bits (89), Expect = 0.083
Identities = 21/61 (34%), Positives = 34/61 (55%)
Frame = +2
Query: 638 VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDC 817
VR I TQ ++K + KK +ME + G ++E+K + E L K + V V + E++D
Sbjct: 163 VRAIVATQPWVIKLK-KKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDV 221
Query: 818 I 820
I
Sbjct: 222 I 222
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 74.1 bits (174), Expect = 4e-12
Identities = 41/111 (36%), Positives = 67/111 (60%), Gaps = 2/111 (1%)
Frame = +2
Query: 47 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 226
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 227 KKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRR 373
+E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 65 GQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERK 114
Score = 52.8 bits (121), Expect = 1e-05
Identities = 28/78 (35%), Positives = 46/78 (58%)
Frame = +2
Query: 587 RKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLE 766
RK++E D + + VRV+ HT KL +KK I+EI++ G IE+++ +A E L
Sbjct: 123 RKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILG 181
Query: 767 KPIPVDSVFAQXEMIDCI 820
K + + VF + E++D I
Sbjct: 182 KQLNITDVFQEGELVDTI 199
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 73.7 bits (173), Expect = 5e-12
Identities = 37/101 (36%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Frame = +2
Query: 44 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 217
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 218 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVW 340
EI VTI+E P M G+ Y ++P+G + + W
Sbjct: 62 ATEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAW 102
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 71.7 bits (168), Expect = 2e-11
Identities = 43/121 (35%), Positives = 67/121 (55%), Gaps = 19/121 (15%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAF 160
K+SAPRHGS+G P+KR+ + +++++P K KPV L +
Sbjct: 5 KYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGY 63
Query: 161 IGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTV 337
+ YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + V
Sbjct: 64 VAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEV 123
Query: 338 W 340
W
Sbjct: 124 W 124
Score = 47.2 bits (107), Expect = 5e-04
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 5/86 (5%)
Frame = +2
Query: 578 ELGRKSIEKDFKKMIRYCSV-----VRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKV 742
E G K +E ++K+ + +RVIA T L +KK I+EI++ GGT+ +++
Sbjct: 175 EYGFKFLENNWKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERI 234
Query: 743 KWAXEHLEKPIPVDSVFAQXEMIDCI 820
+A + L + VD VF + + ID I
Sbjct: 235 DYAEKLLGNYVTVDQVFREGQFIDII 260
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 70.9 bits (166), Expect = 4e-11
Identities = 43/125 (34%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
K ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV D P
Sbjct: 5 KLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPN 63
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYKN 385
S N KEI VT++E PP++ + + Y G ++T W+ + D RR +
Sbjct: 64 SPTNGKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRIHSI 123
Query: 386 CSPLE 400
S L+
Sbjct: 124 SSFLK 128
Score = 36.7 bits (81), Expect = 0.77
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +2
Query: 641 RVIAHTQMKLLKQRQKKA-HIMEIQLNGGTIEDKVKWAXEHLEKPIPVDSVFAQXEMIDC 817
R++ TQ + + KKA ++EIQ+ GG + ++ +A L K I + VF + ++ID
Sbjct: 158 RLLVSTQPRKIPSLGKKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDV 217
Query: 818 I 820
+
Sbjct: 218 V 218
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 69.7 bits (163), Expect = 9e-11
Identities = 35/104 (33%), Positives = 59/104 (56%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
K +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 5 KRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREK 63
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAE 346
K++V T++ TPP++ +G+ GY + GL A V+AE
Sbjct: 64 VPNAGKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAE 107
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 69.3 bits (162), Expect = 1e-10
Identities = 40/110 (36%), Positives = 55/110 (50%)
Frame = -1
Query: 853 DTFVSFALGDTNAVNHFXLGKHRIDRDRFLQMFXGPFHFVLDGTTVKLDFHNVXXXXXXX 674
DT + GD+N +NHF L ++R++R+ F ++F GP +FV DGTTV LDF V
Sbjct: 46 DTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQW 105
Query: 673 XXXXXSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVP 524
V DS N +V + F F + F F E LL F+P
Sbjct: 106 SLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIP 153
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 66.9 bits (156), Expect = 6e-10
Identities = 36/113 (31%), Positives = 61/113 (53%)
Frame = +2
Query: 44 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 223
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 224 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 382
N + + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 58 NGERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 64.5 bits (150), Expect = 3e-09
Identities = 34/109 (31%), Positives = 59/109 (54%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFS PR GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR
Sbjct: 5 KFSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREH 62
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 361
+ K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 63 TPNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 62.5 bits (145), Expect = 1e-08
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 1/105 (0%)
Frame = +2
Query: 50 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINK 229
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 230 KEIVEAVTIIETPPMVCVGVVGYIETPHG-LRALLTVWAEHMSED 361
+ I VT+IE PP+ +G+ Y E G + + W +++ ++
Sbjct: 66 QPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVVYEKWTQNLDKE 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 59.7 bits (138), Expect = 1e-07
Identities = 35/101 (34%), Positives = 52/101 (51%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KF PR GS+GF PKKRS R K + + +++ F K THV+R +
Sbjct: 5 KFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVS 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 337
SK + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 65 SKSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.083
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +2
Query: 95 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 232
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.5 bits (78), Expect = 1.8
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 229 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWTTRSVD 333
E DRG CHH+ S GLCR C + P+ T V+
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAATGFEVE 70
>UniRef50_O82487 Cluster: T12H20.10 protein; n=15;
Magnoliophyta|Rep: T12H20.10 protein - Arabidopsis
thaliana (Mouse-ear cress)
Length = 358
Score = 35.1 bits (77), Expect = 2.3
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -1
Query: 412 KLSSFERRAVFVEATSTVFRHMLRPDSQQSA*SMRGLNVSNNTDTNHRRSLDDGDSLHDL 233
K SS + F T T R+ P A ++ ++N + T+ + L G++L+ L
Sbjct: 36 KFSSIKSSVSFSRKTLTPIRYSSSPADHSPATAVEA--ITNRSKTSLKSRLRGGETLYGL 93
Query: 232 FLVDF*TGTVRFSNHVGHTGLITD 161
FL+ F + H G+ ++ D
Sbjct: 94 FLLSFSPTLAEIAAHAGYDYVVVD 117
>UniRef50_A7TI46 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 253
Score = 35.1 bits (77), Expect = 2.3
Identities = 21/77 (27%), Positives = 40/77 (51%)
Frame = +2
Query: 581 LGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEH 760
L RKSIE + + IR+ +V I +K++++++ + E +L GT + + A
Sbjct: 135 LARKSIEYNTYQSIRFKTVFPDIVEENIKVIEEKKNNQNEKEDELLAGTKKQEDAIANAA 194
Query: 761 LEKPIPVDSVFAQXEMI 811
EKPI ++ + + I
Sbjct: 195 KEKPISLEEILDPEDRI 211
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 4.1
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 80 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 253
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 254 IIETPPMVCVGVVG 295
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_A6Q7D5 Cluster: Putative uncharacterized protein; n=1;
Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
protein - Sulfurovum sp. (strain NBC37-1)
Length = 135
Score = 33.9 bits (74), Expect = 5.4
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGG 724
WQD K I+KD+ + YC +R+ H +L ++ K HI+ + G
Sbjct: 29 WQDNSDAKYIQKDWNGAMLYCRQLRLAGHNDWRLPSIKELK-HILSTEPRDG 79
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.9 bits (74), Expect = 5.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -2
Query: 786 ESTGIGFSRCSXAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 661
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 9.5
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -1
Query: 274 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 125
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 879,809,258
Number of Sequences: 1657284
Number of extensions: 18013205
Number of successful extensions: 40158
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 38648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40133
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77882636090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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