Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C11
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 207 1e-54
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 207 2e-54
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 28 1.5
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 4.6
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz... 26 6.1
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 26 8.1
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 26 8.1
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 207 bits (506), Expect = 1e-54
Identities = 91/117 (77%), Positives = 106/117 (90%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 65 SKMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 98.7 bits (235), Expect = 9e-22
Identities = 42/77 (54%), Positives = 59/77 (76%)
Frame = +2
Query: 590 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEK 769
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA EH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 770 PIPVDSVFAQXEMIDCI 820
+ + S F Q EMID I
Sbjct: 202 TVDIKSTFEQNEMIDVI 218
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 207 bits (505), Expect = 2e-54
Identities = 90/117 (76%), Positives = 106/117 (90%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KF PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPG
Sbjct: 5 KFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKN
Sbjct: 65 SKMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKN 121
Score = 98.7 bits (235), Expect = 9e-22
Identities = 42/77 (54%), Positives = 59/77 (76%)
Frame = +2
Query: 590 KSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKWAXEHLEK 769
+SI ++ +++ +YCSVVRV+AHTQ++ QKKAH+MEIQ+NGG++ DKV+WA EH EK
Sbjct: 142 QSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEK 201
Query: 770 PIPVDSVFAQXEMIDCI 820
+ + S F Q EMID I
Sbjct: 202 TVDIKSTFEQNEMIDVI 218
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 28.3 bits (60), Expect = 1.5
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -3
Query: 488 PSSLIVERRLLGNYMHKVTYSRHINKALIFREESSFCRSDVDSLQT 351
P++ + ++LGNY+ +T+ ++ A F E +C+ + + T
Sbjct: 580 PTTSVQPSQILGNYVTGITFMNKVDYATYFSAE-EYCKQGIHMIPT 624
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 4.6
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 17 PACRTEKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 193
P C K R+ S +P + G K FP D+P S P+ + G T +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350
Query: 194 REPDRPGSKI 223
+ P++ +I
Sbjct: 351 KVPEKSNKEI 360
>SPBC1683.12 |||nicotinic acid plasma membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 6.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 629 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 739
C+VV + T M+ QRQ K I + LNG +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 8.1
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -1
Query: 199 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 35
F N VG G+I D S + +R+VF D +G L ++SH T F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 457 LVTICTK*HTLGILIKLSSFERRAVFVEATSTVFRHMLRPDS 332
++T+C T + + LSS E FV +T + F + P S
Sbjct: 328 VITLCILLFTHSLALLLSSLEMVLAFVGSTGSTFISFILPGS 369
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,617,134
Number of Sequences: 5004
Number of extensions: 75042
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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