Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_C11
(874 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 208 5e-54
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 208 5e-54
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 208 5e-54
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 208 5e-54
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 208 5e-54
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 208 5e-54
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 132 4e-31
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 132 4e-31
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 197 AREHLEKQVQVDTVFAQDEMIDTI 220
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 197 AREHLEKQVQVDTVFAQDEMIDTI 220
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 664
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 197 AREHLEKQVQVDTVFAQDEMIDTI 220
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/32 (68%), Positives = 26/32 (81%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 664
WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 208 bits (507), Expect = 5e-54
Identities = 88/117 (75%), Positives = 104/117 (88%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 214
KFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PG
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPG 64
Query: 215 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKN 385
SK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY N
Sbjct: 65 SKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSN 121
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 137 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 196
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 197 AREHLEKQVQVDTVFAQDEMIDTI 220
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTI 122
Score = 54.8 bits (126), Expect = 8e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 124
KFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 132 bits (318), Expect = 4e-31
Identities = 59/84 (70%), Positives = 71/84 (84%)
Frame = +2
Query: 569 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 748
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 749 AXEHLEKPIPVDSVFAQXEMIDCI 820
A EHLEK + VD+VFAQ EMID I
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTI 122
Score = 54.8 bits (126), Expect = 8e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 35 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 124
KFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 5 KFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,290,460
Number of Sequences: 27780
Number of extensions: 434411
Number of successful extensions: 1094
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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