Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C10
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    29   0.66 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    28   2.0  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    27   3.5  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    27   3.5  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   4.7  
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|...    27   4.7  
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|...    27   4.7  
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch...    26   8.2  

>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = -3

Query: 436 SDQDMNGIASPS---RPAEIMPLSQRTQKPRYSP 344
           SD ++ G+  P    +PA  +PLS+R+  P Y+P
Sbjct: 30  SDPELIGLLKPDNVDKPANSIPLSKRSTSPSYAP 63



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 588 YRGPHNCHVSLTTHPAEVDPMYEIIIGG 671
           Y+G  N   + TT+P E  P+ E+I GG
Sbjct: 395 YQGYGNASNTTTTNPLEPYPIIELIDGG 422


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 594 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQK 713
           GPH+    L +HP  +  + +I +  + + Q V+ YC  K
Sbjct: 142 GPHHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESK 181



 Score = 25.8 bits (54), Expect = 8.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -3

Query: 784 HSIKNFLNSLGFMIPGVGIVTLSGFCLQ*RITDCVFSQPPMIISY 650
           H I+  L+S   +IP V  + L  FC Q ++ D   S+   + +Y
Sbjct: 144 HHIQELLDSHPKIIPCVNQIELHPFCSQQKVVDYCESKGIQLAAY 188


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 498 WKIEDGAEFDTPDRLEYKFGPVASGSLEFDY----RGPHNCHVSLTTHPAEVDPMYEII 662
           + I+D A++D PD ++Y      SG  +  Y    +G      SL+ HP   D +  +I
Sbjct: 190 FSIDDFAQYDIPDTIDYIL--KTSGQTKLTYIGFSQGTAQAFASLSIHPLLNDKINSLI 246


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 832 RTVPDVRSRTNNXPHLHSIKNFLNSLG-FMIPGVGIVTLSG 713
           RT PDV  R N  P+L S    L   G  ++  VG+ + +G
Sbjct: 383 RTSPDVEYRKNADPYLISGTTILEGNGKLLVTAVGVNSFNG 423


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = -2

Query: 395 SGDNAAIPTNPKT-----TIFPSVKNSGAFNFNLIGLGSIFPDDALSVSPASNHHLI 240
           S +   IP+ P T      +  + KNS A + +L  +     +D  S+SPA +H +I
Sbjct: 449 SSNKRLIPSTPPTKKPINAVLDAAKNSAAKDLHLAKMKLNNKNDESSLSPAKSHAVI 505


>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -3

Query: 412 ASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSGLVLFFLMTLLAFPQPPIITSYIG 233
           + PS+P + +P+S        +PP R   +S+   S L  +    L +FP P ++  Y  
Sbjct: 160 SKPSKPRKKVPVSHPLPP---TPPSREEHVSVPRESSLFTYEDDPLPSFPSPYMVDDYYT 216

Query: 232 SD 227
            D
Sbjct: 217 QD 218


>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
           L7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 442 SGSDQDMNGIASPSRPAEIMPLSQRTQKPRYSPPLRIPGLSISTLSG-----LVLFFLMT 278
           S +  D  G  S   P+E+MPL  + +      P  +PG +++  +      L  FF+ +
Sbjct: 214 SPTSGDQTGNISFGLPSEVMPLFPQIEAVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273

Query: 277 LLAF 266
           L+ F
Sbjct: 274 LIPF 277


>SPAC1006.02 |||WD repeat protein, human GNB1L
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +1

Query: 799 CWCVTGRRERSSWSGST 849
           CWC+T  R + +W   T
Sbjct: 39  CWCLTSMRPKCAWRAHT 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,751,220
Number of Sequences: 5004
Number of extensions: 82847
Number of successful extensions: 230
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)