Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C10
         (882 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0313 - 8866182-8866381,8866470-8866638                           32   0.70 
04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931     31   1.2  
06_01_0172 + 1362101-1363708                                           31   1.6  
05_03_0604 - 16132173-16132391,16132488-16132556,16132824-161328...    30   2.8  
01_06_0837 - 32328191-32328369,32328682-32328731,32328844-323289...    29   3.7  
08_02_0851 - 21866088-21866210,21866311-21866413,21866531-218667...    29   6.5  
12_02_0259 + 16527788-16527842,16528014-16528381                       28   8.6  
03_02_0800 + 11337206-11337532,11337634-11337957,11338060-113381...    28   8.6  

>02_02_0313 - 8866182-8866381,8866470-8866638
          Length = 122

 Score = 31.9 bits (69), Expect = 0.70
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 456 YYVGVCTGW--GATGSWKIEDGAEFDTPDRLEYKFGPVASGSLEFDYRGPHNCHV 614
           ++VG   GW  G  G W  E+G  F   D L +K+ P+    L+ D+ G   C V
Sbjct: 29  WHVGDDKGWTFGVAG-W--ENGKAFKVGDVLVFKYSPMMHNVLQVDHAGYDGCKV 80


>04_04_0578 + 26353830-26353929,26354030-26354277,26354539-26354931
          Length = 246

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 336 LNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEP 446
           L G  +R  WV W   +I AG  G    F+    PEP
Sbjct: 195 LVGWNWRHHWVYWLGPLIGAGMAGALYEFVMAEQPEP 231


>06_01_0172 + 1362101-1363708
          Length = 535

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = +1

Query: 253 LEAGETLRASSGKIEPSPIRLKLKAPEFLTEGNIVVFGFVGIAALSPLDARVKLFHSYPG 432
           L +   LR ++     +P +L +  P  L   NI++ G VGI     LDA +K+    PG
Sbjct: 167 LVSARRLRLAAALFRAAPTKLYI-TPN-LVSCNILLKGLVGIG---DLDAALKVLDEMPG 221

Query: 433 L--IRNLSQFTTSESAQAGVPQAPGKSKM 513
           L    ++  +TT  SA  G     G  K+
Sbjct: 222 LGITPDVVTYTTVLSAYCGKGDIEGAQKL 250


>05_03_0604 -
           16132173-16132391,16132488-16132556,16132824-16132898,
           16132981-16133113,16133188-16133297,16133360-16133407,
           16133657-16133983,16135006-16135233,16135360-16135689,
           16135780-16136586
          Length = 781

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
 Frame = +3

Query: 165 VQFKVRAANDAHIALTTGPQESDPMYEVMIGGWGNAKSVIRKNRTKPDKVEIESP----- 329
           + F+  A ND  + L    Q     Y   +    +   ++  +R K  K+E++       
Sbjct: 33  ITFEASAHND--VTLVFREQPGSQHYHYKMDNSRHYIVILGSHRNKRLKIEVDGKTVVDV 90

Query: 330 ---GILNGGEYRGFWVRWDSGIIS--AGREGEAIPFISWSDPEP-FPVYYVGVCTGW 482
              G+     ++ +W+    G+IS   GR         W DP+P   V YVG+ + W
Sbjct: 91  AGIGLCCSSSFQSYWISIYDGLISIGQGRHPNNNILFQWLDPDPNRNVQYVGL-SSW 146


>01_06_0837 -
           32328191-32328369,32328682-32328731,32328844-32328923,
           32329193-32329345,32329505-32329654,32329877-32330000,
           32330086-32330198,32330287-32330420,32330566-32331232
          Length = 549

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +3

Query: 324 SPGILNGGEYRGF---WVRWDSGIISAGREGEAIPFISWSDPEPFPVYY 461
           SP +L GG Y G    W+R     I+ G    + P + + D  P  ++Y
Sbjct: 211 SPVVLFGGSYGGMLAAWMRLKYPHIAVGALASSAPILQFEDVVPSTIFY 259


>08_02_0851 -
           21866088-21866210,21866311-21866413,21866531-21866744,
           21866877-21867075,21867171-21868151
          Length = 539

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 686 LCVLPTADDYFIHWIYFCGMSCEGNVAVVR 597
           LCVLP    Y +H I  CGM     + V++
Sbjct: 226 LCVLPMFHVYSLHSILLCGMRAGAAIVVMK 255


>12_02_0259 + 16527788-16527842,16528014-16528381
          Length = 140

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = -2

Query: 422 EWNSFTLASSGDNAAIPTNPKTTIFPSVKNSGAFNFNLIGLGSIFPDDALSVS 264
           E +S  +A+ G  +A+P  PK  +F  +       + L+G G   P++  SV+
Sbjct: 68  EVSSVVVAAPGFRSAVPVEPK--LFRRIAGGEEKGYYLVGDGEAIPNNGSSVT 118


>03_02_0800 +
           11337206-11337532,11337634-11337957,11338060-11338194,
           11338280-11338519
          Length = 341

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 672 WENT-QSVIRYCRQKPDKVTIPTPGIMNP 755
           W +T Q  I YC+Q PDKV  PT  +  P
Sbjct: 152 WSHTPQYQIGYCQQCPDKVAWPTAELGPP 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,703,392
Number of Sequences: 37544
Number of extensions: 599598
Number of successful extensions: 1604
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1604
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)