Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C08
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)                29   3.4  
SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)                     28   5.9  
SB_21218| Best HMM Match : C1_1 (HMM E-Value=3.6)                      28   7.8  
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)                      28   7.8  
SB_10242| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_27990| Best HMM Match : DUF229 (HMM E-Value=6.5e-07)
          Length = 887

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -3

Query: 261 YIMLQKRKRWRDGH*CLLLCSYSQNRS*PSSYLLF 157
           + ++Q+   W D H CLL+  YSQ  S PS++  F
Sbjct: 411 FTLVQEDSCWYDKHGCLLI-DYSQRNSTPSTWSEF 444


>SB_16225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 519

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 99  RNISTSKKNSDTATTACETKTEDKNWVSYGFDYTSKEEDTNA 224
           ++I+TS  N++  T+A ++ T DK+ + +     +KEE T+A
Sbjct: 386 QDITTSNNNANAVTSA-QSGTSDKDGIGWERGLRNKEEGTSA 426


>SB_1629| Best HMM Match : C2 (HMM E-Value=7.3e-17)
          Length = 327

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 93  VSRNISTSKKNSDTATTACETKTEDKNWVSYGFD-YTSKEEDTN 221
           V R +  S KNS   T+   +  +DK++ S G D Y +  +D N
Sbjct: 68  VQRFVQHSSKNSSETTSTNTSPVDDKHFFSEGSDPYRTAPDDMN 111


>SB_21218| Best HMM Match : C1_1 (HMM E-Value=3.6)
          Length = 352

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 42  LRHMPLVQRSVWNHFNKVSRNISTSKKNSDTATTACE 152
           +R  PL  R VW    +V   +  SKKN+ T    CE
Sbjct: 110 IRPTPLKYRDVWRAA-QVESKVWNSKKNTSTCVRRCE 145


>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
          Length = 533

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 42  LRHMPLVQRSVWNHFNKVSRNISTSKKNSDTATTACE 152
           +R  PL  R VW    +V   +  SKKN+ T    CE
Sbjct: 291 IRPTPLKYRDVWRAA-QVESKVWNSKKNTSTCVRRCE 326


>SB_10242| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +3

Query: 318 AQREAFLELRRREKAGLPPISPNFIDPKLIKLPDESE 428
           AQR   L  +  EK GL   +PN   P  +  PD +E
Sbjct: 34  AQRRLGLVFKGGEKVGLDSRAPNCCSPPFVMAPDLTE 70


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,093,977
Number of Sequences: 59808
Number of extensions: 415763
Number of successful extensions: 1078
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)