Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C07
         (876 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical pr...   101   5e-22
L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    30   1.9  
AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich ...    30   2.5  
AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related...    30   2.5  
Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical pr...    29   4.4  
M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger pro...    29   4.4  
AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical ...    29   5.8  

>U70855-1|AAB09161.1|  390|Caenorhabditis elegans Hypothetical
           protein K08F11.3 protein.
          Length = 390

 Score =  101 bits (243), Expect = 5e-22
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%)
 Frame = +2

Query: 122 QALELRRYFKSLGAEISEEKSPKGIEDDLHKIVGVCDACFKEPSES-DIEAILNSIVSIM 298
           Q  ELR+Y   L    S +  P G  +    ++ +C      PS S D++ +LNSI S++
Sbjct: 18  QLQELRQY---LNKHDSVKLDPNGPSETAQNMIEICSTLNVLPSWSQDVDLVLNSISSLI 74

Query: 299 VSIPLERGENLILAFSQRLT----KAPG-PKLGMVALQSLWRLYNNLEPNSPLRYHVYYH 463
           V +P E+ E ++ +F + +     K  G      +A++ L  LY        ++  ++  
Sbjct: 75  VVVPGEKCEPVVDSFIKNVAPQFYKGTGWASHAGIAVRVLSNLYKGYSNFHTVQEKIFKA 134

Query: 464 VIELAARVGFVREVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQ-VLKDQNSELAAKVMI 640
           ++++ A    + E+   +E L+  F       E  +++ R +H+ +L DQ  + AAKVM 
Sbjct: 135 LVDMCAEARLIGELECNLETLQDRFNTWKTPVEGQREILRAVHRALLVDQRVDQAAKVMT 194

Query: 641 ELLGTYTDENASYAREDAIKCIATALADPNTFLLDPLLTLKPVR 772
            LLGTYT+++A+ AR+DA++C+ TA+ DP +F  D L  L  V+
Sbjct: 195 ALLGTYTEKDAAAARDDAMECVRTAVVDPKSFSFDHLERLSAVK 238


>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = +2

Query: 497  REVFTGVEQLRKEFANCPPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGT 655
            +++  G+   ++E   CP +NE+++K+    +    D NS   A+ +I  LG+
Sbjct: 873  KQITVGIASKKEEVITCPKTNEELEKIMNRAYG--DDANSFTLAQEIIVYLGS 923


>AF098504-3|AAK73898.4| 2395|Caenorhabditis elegans Leucine-rich
            repeats, ras-likedomain, kinase protein 1 protein.
          Length = 2395

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 792  MSSPSXKRTGFNVNKGSSRNVLG--SANAVAIHLIASSLAYEAFSSVYVP 649
            + SP   RT   +  GS+R +    S   ++IH IAS+ ++   SS+Y+P
Sbjct: 2138 IDSPYEIRTATFLGNGSTRQIWAGHSEGRISIHHIASNDSFSFSSSLYLP 2187


>AB297384-1|BAF48647.1| 2393|Caenorhabditis elegans PARK8-related
            kinase protein.
          Length = 2393

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -1

Query: 792  MSSPSXKRTGFNVNKGSSRNVLG--SANAVAIHLIASSLAYEAFSSVYVP 649
            + SP   RT   +  GS+R +    S   ++IH IAS+ ++   SS+Y+P
Sbjct: 2136 IDSPYEIRTATFLGNGSTRQIWAGHSEGRISIHHIASNDSFSFSSSLYLP 2185


>Z81039-2|CAB02774.1| 2150|Caenorhabditis elegans Hypothetical
           protein C25D7.3 protein.
          Length = 2150

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 548 PPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADP 727
           P   ++   +YRL  Q L++ N E    ++ E L   TDE  + +          ++ D 
Sbjct: 288 PQCEQEFWDVYRLQMQWLEEDNIEENITMLRENLSKVTDEEFNRSVYIMRPENRASIHDD 347

Query: 728 NTFLLDPLLTLKPV 769
            TF  D  + LKP+
Sbjct: 348 VTFTTDAEINLKPI 361


>M85149-1|AAA28144.1| 2150|Caenorhabditis elegans zinc finger
           protein protein.
          Length = 2150

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/74 (27%), Positives = 33/74 (44%)
 Frame = +2

Query: 548 PPSNEQMQKLYRLLHQVLKDQNSELAAKVMIELLGTYTDENASYAREDAIKCIATALADP 727
           P   ++   +YRL  Q L++ N E    ++ E L   TDE  + +          ++ D 
Sbjct: 288 PQCEQEFWDVYRLQMQWLEEDNIEENITMLRENLSKVTDEEFNRSVYIMRPENRASIHDD 347

Query: 728 NTFLLDPLLTLKPV 769
            TF  D  + LKP+
Sbjct: 348 VTFTTDAEINLKPI 361


>AL021175-4|CAA15971.1|  356|Caenorhabditis elegans Hypothetical
           protein Y6E2A.5 protein.
          Length = 356

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = +2

Query: 575 LYRLLHQVLKDQNSELAAKV--MIELLGTYTDENASYAREDAIKCIATALADPNT 733
           L +L  +VL+ Q S++A K+   IE LG Y ++  S+AR   ++     L  P+T
Sbjct: 268 LDKLFLKVLQKQISQVATKLCNFIEELGHYENDKESFARIQNLESHIDPLEIPST 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,507,433
Number of Sequences: 27780
Number of extensions: 332898
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)