Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C06
         (879 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   2.0  
SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   4.7  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    27   4.7  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    26   8.1  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   8.1  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/66 (27%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +3

Query: 621  ANKPGAESTVTAEPYSLQWFVNHYSTTTKK--LTRKHLDRYIYSFSSKSRKLLYF*NESR 794
            AN P + ST+TA+P + +  +N+ ++  +K  +TRK +   + +     R+  Y   E++
Sbjct: 1537 ANIPNSPSTITAKPLNDEKAINNENSVKQKTVITRKDVVSKVLALFRPHRETYY--RETQ 1594

Query: 795  N*XAQR 812
            N   Q+
Sbjct: 1595 NKILQK 1600


>SPAC8E11.09c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 448 PVKTLLPPKQTQTQCRQYRAAGHRTPHRPV 537
           P   +  PK+ Q  C  Y    +RTP  PV
Sbjct: 63  PPIAISDPKEAQNHCSSYYYIKYRTPDSPV 92


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 591 VTNIKPTSTVANKPGAESTVTAEPYSLQWFVNHY 692
           +T+IK     A K GA+  +T E   +QW  N Y
Sbjct: 150 MTDIKDVVEHAAKLGAQRLITLEELPVQWHNNPY 183


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 86  KLHTPRRHDDFERSSRCY 139
           KLHT R+ DD +R  + Y
Sbjct: 448 KLHTKRKRDDLDREEQIY 465


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 648 VTAEPY-SLQWFVNHYSTTTKKLTRKHLDRYI-YSFSS 755
           + A P+ +L WF N  S    +L R+ +D Y  Y F +
Sbjct: 649 IGAPPFPTLDWFTNDSSVIQNELLRRSVDTYFRYIFQT 686


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,411,361
Number of Sequences: 5004
Number of extensions: 68876
Number of successful extensions: 174
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)