Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C06
         (879 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0971 - 21949721-21949936,21950051-21950484,21950599-219507...    30   2.1  
07_03_0846 - 21983581-21986055                                         29   3.7  
01_06_0903 + 32862551-32864752,32865341-32865535,32866219-328665...    29   6.5  
11_06_0598 - 25391923-25393197                                         28   8.6  
02_03_0378 + 18327622-18329826                                         28   8.6  

>10_08_0971 -
           21949721-21949936,21950051-21950484,21950599-21950791,
           21950909-21951007,21951114-21951191,21951275-21951669,
           21954317-21954482,21954840-21954927,21955015-21955127,
           21955242-21955426,21955840-21955987,21956071-21956349,
           21956425-21956529,21956892-21957137,21957367-21957408,
           21957539-21957613
          Length = 953

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 591 VTNIKPTSTVANKPGAESTVTAEPYSLQWFVNHYS 695
           V+ +KP  T  N P A S++  EPY L W  ++ S
Sbjct: 595 VSAMKPKDTNVNGP-ASSSIKVEPYKLSWMQDYAS 628


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 265 SSSPNLSPTXTVVLLGVSGNPIGLDPAKEGR*HSTSVDEVSNITTA 128
           S  P   PT   + +G  GN + LD +K  +  ST+V   SN T A
Sbjct: 81  SDVPVSDPTTASLSIGSDGNLVLLDQSKNRQLWSTNVSVASNSTVA 126


>01_06_0903 +
           32862551-32864752,32865341-32865535,32866219-32866523,
           32866664-32866849,32867137-32867314,32867548-32867574
          Length = 1030

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 207 FPDTPNRTTVXVG-DRFGDDDSTTPRLPIEANGDLELI 317
           F D P R T+      FG DDS+ PRL  E N  L+ +
Sbjct: 661 FSDNPRRQTIAAAASLFGADDSSNPRLD-ELNKTLQAL 697


>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 21/73 (28%), Positives = 35/73 (47%)
 Frame = -3

Query: 337 GNLLSLSINSKSPFASMGSLGVVESSSPNLSPTXTVVLLGVSGNPIGLDPAKEGR*HSTS 158
           G LL+LSI    P  S G++   +  +  +SP   +  L +SG   GL          T 
Sbjct: 229 GCLLTLSIQINHPATSEGTVPETDKLATLVSPPKLLQSLNISGITSGLPD------WITE 282

Query: 157 VDEVSNITTAATF 119
           +D+++ IT + T+
Sbjct: 283 LDQLTKITLSNTY 295


>02_03_0378 + 18327622-18329826
          Length = 734

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +3

Query: 684 NHYSTT-TKKLTRKHLDRYIYSFSSKSRK 767
           N YS+T ++K  RKH + YIY++SS   +
Sbjct: 298 NAYSSTASEKPKRKHEESYIYNYSSSGNE 326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,422,392
Number of Sequences: 37544
Number of extensions: 464215
Number of successful extensions: 1140
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)