Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C06
         (879 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.6  
SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)                28   8.7  
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     28   8.7  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    28   8.7  

>SB_7913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 305 LRVDR*TEQVACR-QATLLVHQLASLRSAQEEPTNPHAEA*RIHRSHHAQSKRCYRPSK 478
           LR DR  + +  R Q +LL   L  + S +EE    H E+   HRS   + +R YR  +
Sbjct: 152 LREDRVNDIILPRIQRSLLEDDLEDMESEEEEEEEEHKESPVHHRSLSPEPRRGYRDQR 210


>SB_47841| Best HMM Match : E-MAP-115 (HMM E-Value=0.85)
          Length = 351

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 437 SHHAQSKRCYRPSKLKR 487
           +H A+S+RC+RPS  +R
Sbjct: 52  THQARSRRCFRPSSFRR 68


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = -3

Query: 370 QLMNQKGCLSTGNLLSLSINSKSPFASMGSLGVVESSSPNLSPTXTVVL 224
           QL N KGCLST  LLS+ +   S  A + +    ES S N+      V+
Sbjct: 447 QLFNTKGCLST--LLSILVAYFSLDAKVSNKDKSESRSENIEDVLVKVI 493


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 2/109 (1%)
 Frame = +1

Query: 346  SNPSGSSTGKP*KRTGRTHKPTCRGLTDS*IPSCPVKTLLPPKQTQTQCRQYRAAGHRTP 525
            SNP+ SS   P  RTG T       + D  IP  P ++L    Q +T+       G  TP
Sbjct: 2072 SNPADSSQQAPVMRTGTT-SDMLNAIRD--IPVQPSRSLESFVQNKTRETTNSLGGFTTP 2128

Query: 526  --HRPVARFKATLMQL*ETDLILTSPILNQRAPLQTNPARKVRSRLNPT 666
                P+ +  AT      T  + T+P+  +   + T P   +R  ++ T
Sbjct: 2129 MFQPPMEQVFATPAAT-TTPAMDTTPVCAKTPTMDTGPEGVMRPSMDTT 2176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,293,705
Number of Sequences: 59808
Number of extensions: 538341
Number of successful extensions: 1783
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1782
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2502612210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)