Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C06
         (879 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          25   0.92 
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      25   0.92 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.2  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    23   4.9  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   8.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 261 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHMQRPN 425
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 25.0 bits (52), Expect = 0.92
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +3

Query: 261 DDSTTPRLPIEANGDLELIDRLSKLPVDKQPFWFINWQALEAHRKNPQTHMQRPN 425
           D+S T    I   G + L D++   P+D+ P W  N+     + K+   +  RPN
Sbjct: 628 DESNTKSYEIPLYGKMTLDDKVFGFPLDR-PMWAWNFTIPNMYFKDVFIY-NRPN 680


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 214 IHLTGPPXLSETDLAMTTQQPQ 279
           +HLT PP  S +  A  +Q PQ
Sbjct: 673 LHLTSPPARSPSSQAQASQCPQ 694


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 361 NQKGCLSTGNLLSLSINSKSPFASMGSL 278
           + K  LS  +LLS  +   +P  SMG+L
Sbjct: 107 DNKSYLSLRSLLSADVAVATPLISMGAL 134


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +3

Query: 378 LEAHRKNPQTHMQRP 422
           L  H ++PQTH+  P
Sbjct: 325 LNVHFRSPQTHVMAP 339


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 288 WEVLGLLSRHRQICLRQXRWS 226
           WE L  L + R+ C R  +W+
Sbjct: 461 WEFLLKLLQDREYCPRYIKWT 481


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,296
Number of Sequences: 438
Number of extensions: 4524
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28523595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)