Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_C05
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68213-4|CAA92441.1|   73|Caenorhabditis elegans Hypothetical pr...    76   2e-14
AF202929-1|AAK69379.1|   73|Caenorhabditis elegans Nx protein.         76   2e-14
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    34   0.063
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    34   0.063
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc ...    29   3.1  
AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like p...    29   3.1  
AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolo...    29   3.1  
Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical...    28   5.4  
AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical ...    27   7.2  
AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical ...    27   7.2  
U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf (diva...    27   9.5  

>Z68213-4|CAA92441.1|   73|Caenorhabditis elegans Hypothetical
           protein C01F6.9 protein.
          Length = 73

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 33/44 (75%), Positives = 35/44 (79%)
 Frame = +3

Query: 297 DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDDL 428
           DQK AA KAL H C VC A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 27  DQKAAAAKALNHKCTVCLAMMPDPKTYKQHFENKHPKSPLPAEL 70


>AF202929-1|AAK69379.1|   73|Caenorhabditis elegans Nx protein.
          Length = 73

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 33/44 (75%), Positives = 35/44 (79%)
 Frame = +3

Query: 297 DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDDL 428
           DQK AA KAL H C VC A MPDPKTYKQHFENKHPK+ LP +L
Sbjct: 27  DQKAAAAKALNHKCTVCLAMMPDPKTYKQHFENKHPKSPLPAEL 70


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           HVCV+C  QMP   T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359



 Score = 33.9 bits (74), Expect = 0.083
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           H+C++C  ++P+ +T ++H +NKH
Sbjct: 39  HMCLLCNRRIPENETLREHMKNKH 62



 Score = 30.7 bits (66), Expect = 0.77
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           H C++C  Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           HVCV+C  QMP   T ++H E +H
Sbjct: 336 HVCVLCNHQMPKTVTVQEHMEKEH 359



 Score = 33.9 bits (74), Expect = 0.083
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           H+C++C  ++P+ +T ++H +NKH
Sbjct: 39  HMCLLCNRRIPENETLREHMKNKH 62



 Score = 30.7 bits (66), Expect = 0.77
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKH 401
           H C++C  Q+P+ +T + H +++H
Sbjct: 206 HTCLLCNRQIPENETVRDHMKSQH 229


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +3

Query: 330 HVCVVCKAQMPDPKTYKQHFENKHPK 407
           H+C +C +  P P+    HF   H K
Sbjct: 183 HICSICDSAFPSPQAQSVHFAEAHKK 208


>AF067942-1|AAG45570.1|  488|Caenorhabditis elegans Hypothetical
           protein ZK6.8 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = -3

Query: 391 SKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFFI---LDIFSAALAXD*ILL 221
           S CCL  + S + A+        AF  + F+    C   FFI   L+I+   +    IL 
Sbjct: 385 SDCCLCSVRSVVCAIAMPTRRNQAFSVSKFYQAIGCCVIFFISPLLNIYYYVIGIP-ILC 443

Query: 220 VSASHCVLLRKRRL 179
           + AS C     RR+
Sbjct: 444 IIASVCFFFETRRI 457


>Z77667-6|CAB01235.2|  870|Caenorhabditis elegans Hypothetical
           protein M04B2.1 protein.
          Length = 870

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 413
           A  Q K     +++ C VC  +    +T + H  + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853


>AF416567-1|AAL27004.1|  870|Caenorhabditis elegans nuclear zinc
           finger protein protein.
          Length = 870

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 ATDQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKND 413
           A  Q K     +++ C VC  +    +T + H  + HPK D
Sbjct: 813 ADHQVKLCSAEIMYSCDVCAFKCSSYQTLEAHLTSNHPKGD 853


>AF300704-1|AAG24400.1|  622|Caenorhabditis elegans incenp-like
           protein ICP-1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 300 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 425
           +K+A Q+AL         +M  P+TY+ + +N +  NDL  D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534


>AC025716-5|AAK39616.1|  622|Caenorhabditis elegans Incenp homolog
           protein 1 protein.
          Length = 622

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 300 QKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKHPKNDLPDD 425
           +K+A Q+AL         +M  P+TY+ + +N +  NDL  D
Sbjct: 493 EKQARQEALRKTPPPAAYEMTPPRTYQNNSKNDYGLNDLNSD 534


>Z92786-1|CAB07203.1|  250|Caenorhabditis elegans Hypothetical
           protein F47H4.1 protein.
          Length = 250

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/40 (25%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 285 HSAT-DQKKAAQKALVHVCVVCKAQMPDPKTYKQHFENKH 401
           HSA+ ++ +    +  H C++C+  +   +T ++H  N+H
Sbjct: 36  HSASLNRHRQLMHSNEHTCMMCERALNQKETIREHMRNEH 75


>AL132948-46|CAD31837.2|  473|Caenorhabditis elegans Hypothetical
           protein Y39B6A.27 protein.
          Length = 473

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = -3

Query: 400 CLFSKCCL*VLGSGIWALQTTQTWTSAFCAAFFWSVALCPCCFF 269
           C  S CC+  + S I AL      + +F  A  +    C  CFF
Sbjct: 368 CGMSDCCINSVRSVICALVMPSRRSQSFAVARMYHAFACTICFF 411


>AL023847-8|CAI46616.1|  262|Caenorhabditis elegans Hypothetical
           protein Y57A10C.11 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 385 CCL*VLGSG-IWALQTTQTWTSAFCAAFFWSVALCPCCFFILDI 257
           CCL  +GSG +W +   + W       F+W   L P     L+I
Sbjct: 55  CCL--VGSGWMWVVDNKRKWYIRSIRRFYWHRILMPTAVVCLNI 96


>AL021503-9|CAA16417.2|  572|Caenorhabditis elegans Hypothetical
           protein Y68A4A.5 protein.
          Length = 572

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +2

Query: 167 VLVYKTTFSEQYTMARGHQQNSVTS*SCGKDVQNEETAGAQCHRPEESCTKGTCP 331
           VL+ +TT     T   G +Q + TS +CG D   ++  G + +    S    TCP
Sbjct: 518 VLILETTGGPLATSGTGPRQIAETSITCGADKIWQDANGIRGNTLLASVAPQTCP 572


>U23525-7|AAC46569.1|  557|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 1, isoform
           a protein.
          Length = 557

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 418 GRSFLGCLFSKCCL*VLGSGIWALQTTQTWTSAFCAAF 305
           G  +LGC F    + + G GI+A   + T T  +   F
Sbjct: 341 GGIYLGCQFGAIAMFIWGIGIFAAGQSSTMTGTYTGQF 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,385,740
Number of Sequences: 27780
Number of extensions: 196234
Number of successful extensions: 591
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)