Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B24
(843 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 33 0.38
SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18) 32 0.67
SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.67
SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10) 29 3.6
SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33) 29 3.6
SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1) 29 4.7
SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32) 29 4.7
SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_47959| Best HMM Match : rve (HMM E-Value=3e-29) 29 6.2
SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6) 29 6.2
SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5) 29 6.2
SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012) 28 8.2
SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_25378| Best HMM Match : CNH (HMM E-Value=0.037) 28 8.2
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/28 (46%), Positives = 22/28 (78%)
Frame = +1
Query: 484 NSTIGYIAPNAFHGVHDLYAVNLSNNNL 567
N++I IAP+AF G+ +L ++NL +NN+
Sbjct: 137 NNSISAIAPHAFKGLDNLQSLNLRHNNI 164
>SB_49900| Best HMM Match : GETHR (HMM E-Value=5e-18)
Length = 1044
Score = 31.9 bits (69), Expect = 0.67
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 715 NMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFKKLLDLEXL 843
N+QYI F+ L+Y+N+A N + ++ F L DL+ L
Sbjct: 7 NIQYIDDFAFEKARDLVYINLANNPIEVIEEGAFATLHDLQVL 49
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 481 VNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFA 594
V + I YI AF DL +NL+NN ++ + FA
Sbjct: 4 VRANIQYIDDFAFEKARDLVYINLANNPIEVIEEGAFA 41
>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1465
Score = 31.9 bits (69), Expect = 0.67
Identities = 26/130 (20%), Positives = 53/130 (40%)
Frame = +1
Query: 454 LHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXXXX 633
L + ++ + + + + + F G+ L + L N L+++ TF
Sbjct: 115 LASLRSLDLSANRLSSLPEDTFEGLSSLQDLFLDFNRLRAIPETTFHGLAALQRLRLHNN 174
Query: 634 XXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDT 813
SE S++ L ++ + I TF+N+ GL L + NN++++D
Sbjct: 175 NLK---TFSERTLQGTLSLKSLQLNNNLLTRIEPGTFRNLRGLEILYLNNNNITELDQRL 231
Query: 814 FKKLLDLEXL 843
F + L+ L
Sbjct: 232 FTRTPSLKLL 241
>SB_51625| Best HMM Match : LRR_1 (HMM E-Value=2.7e-10)
Length = 212
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/60 (23%), Positives = 32/60 (53%)
Frame = +1
Query: 664 NYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFKKLLDLEXL 843
++FL ++++ L++ ++ I F+N+ L L + N + P+ F++L L+ L
Sbjct: 129 DFFLGLNNIRTLNLRRNGIKEIEFGAFRNLTALESLYLFRNRFFGIGPNAFERLTALQVL 188
>SB_25669| Best HMM Match : LRR_1 (HMM E-Value=9.1e-33)
Length = 1065
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/55 (25%), Positives = 33/55 (60%)
Frame = +1
Query: 679 ASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFKKLLDLEXL 843
+ ++ +L VS ++ + +F++ L +L+++ N++SD+ TF+ L L+ L
Sbjct: 68 SKNLGDLTVSRSPLKLLKNTSFQDYQYLKWLDLSNNDISDIQDGTFENLRYLKQL 122
>SB_50335| Best HMM Match : Baculo_11_kDa (HMM E-Value=2.1)
Length = 370
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 262 LYNEDRPCPRDCICSVSQGYRQAK 333
L N + CP C C +S+GYR +K
Sbjct: 119 LDNVGKLCPSHCFCLLSRGYRASK 142
>SB_45368| Best HMM Match : fn2 (HMM E-Value=3.1e-32)
Length = 1206
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 478 IVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETF 591
I N+ I I F V DL +NL NN + ++ +TF
Sbjct: 1120 IGNNLIKDIPSGVFANVRDLQVLNLHNNEITTIDEDTF 1157
>SB_55282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1565
Score = 28.7 bits (61), Expect = 6.2
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 9/48 (18%)
Frame = +3
Query: 462 GCYCKNREQH-----DWLYRPQCFPWCP*PLRSQP----IQQQPKEPS 578
G YC+N+EQ D+ +R C P P+ SQP IQ P EPS
Sbjct: 1314 GVYCRNKEQRSGKCKDFRFRFACSD-IPRPVPSQPSVPSIQDVPDEPS 1360
>SB_47959| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 622
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 220 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 390
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 490 EQLEDNPTVPLEEHIDNEGRKCKRQKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 545
>SB_59124| Best HMM Match : Bac_luciferase (HMM E-Value=1.6)
Length = 1953
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 620 RFQTIPSNFLQLGPKIT-S*TLPLYKSLMFHTVTCSTSRQILSKICLV 760
R + S L L PKIT S T L K H V + ++Q++S++C +
Sbjct: 654 RMKIHASEALTLEPKITQSSTHRLSKPFTVHAVQSTMAKQLVSQVCSI 701
>SB_18529| Best HMM Match : DUF1388 (HMM E-Value=3.5)
Length = 435
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 182 KPSRKTKTPTTYWINMRITNPRNTKRFCTTRTGP 283
K SRKTKT + +++ RNTK T+T P
Sbjct: 89 KTSRKTKTSSNTKTSLKTKTSRNTKTSRNTKTKP 122
>SB_16977| Best HMM Match : Involucrin (HMM E-Value=0.012)
Length = 247
Score = 28.3 bits (60), Expect = 8.2
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 220 DQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGYRQAKCSFLEIGTQKFGDDILDLV 390
+Q ED +E + NE R C R IC + Y + K +KF ++ D+V
Sbjct: 115 EQLEDNPTVPLEEHIDNEGRKCKRKKICESQKTYNE-KMKKQTQKAKKFKFNVYDIV 170
>SB_33751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 28.3 bits (60), Expect = 8.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = -1
Query: 777 NIQVHQTRHIFESICRDVLHVTV 709
++QVH +RH+ ++C D+ ++ V
Sbjct: 2 DVQVHLSRHLLRTVCTDITNLMV 24
>SB_25378| Best HMM Match : CNH (HMM E-Value=0.037)
Length = 346
Score = 28.3 bits (60), Expect = 8.2
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +1
Query: 163 FGESINKTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDCICSVSQGY 321
F ES+ + + D +++ +ED P+++++ L D P P+ + +GY
Sbjct: 286 FDESLQLFARLETDPTHVIGLFEDLLPSDFRKQLEYPDEP-PKLLMSETEKGY 337
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,193,078
Number of Sequences: 59808
Number of extensions: 525142
Number of successful extensions: 1531
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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