Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B24
         (843 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    33   0.002
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   4.7  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   4.7  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   4.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 33.5 bits (73), Expect = 0.002
 Identities = 28/131 (21%), Positives = 52/131 (39%)
 Frame = +1

Query: 451 GLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXXX 630
           GL  + T     +++  +    F    DL  ++L+ N L+ L    F             
Sbjct: 259 GLTVLRTFNASYNSLDSLPEGLFASTRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318

Query: 631 XXXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPD 810
                     E  FL    +  L++SY  + +I A  FK++  L  L++  N++  ++ +
Sbjct: 319 NRLGSDRV-DETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRIESN 377

Query: 811 TFKKLLDLEXL 843
            F  L +L  L
Sbjct: 378 AFLPLYNLHTL 388



 Score = 31.9 bits (69), Expect = 0.008
 Identities = 17/60 (28%), Positives = 32/60 (53%)
 Frame = +1

Query: 664 NYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDPDTFKKLLDLEXL 843
           N FL   ++  L++S   ++ + A  F  +  L  L ++GN ++ +DP  F+   DL+ L
Sbjct: 377 NAFLPLYNLHTLELSDNKLRTVGAQLFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKEL 436



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 28/132 (21%), Positives = 55/132 (41%)
 Frame = +1

Query: 448 LGLHQVATVKIVNSTIGYIAPNAFHGVHDLYAVNLSNNNLKSLHPETFAXXXXXXXXXXX 627
           LGL ++  + +  + + +I    F  +  L  ++L NN++  +  E+ A           
Sbjct: 332 LGLIRLIVLNLSYNMLTHIDARMFKDLFFLQILDLRNNSIDRI--ESNAFLPLYNLHTLE 389

Query: 628 XXXXXFPAAGSENYFLNASSVQELDVSYCNMQYITANTFKNMPGLMYLNVAGNNLSDMDP 807
                    G++  F     +  L +S   +  I    F+N   L  L+++GN L+ + P
Sbjct: 390 LSDNKLRTVGAQ-LFNGLFVLNRLTLSGNAIASIDPLAFRNCSDLKELDLSGNELTSV-P 447

Query: 808 DTFKKLLDLEXL 843
           D  + L  L+ L
Sbjct: 448 DALRDLALLKTL 459


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 181 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 297
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 309 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 347


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 181 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 297
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 224 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 262


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/39 (25%), Positives = 22/39 (56%)
 Frame = +1

Query: 181 KTVKKDKDADNLLDQYEDYEPAEYQEVLYNEDRPCPRDC 297
           +T +KD  +D+++ +       + Q++L + + PC  DC
Sbjct: 543 ETHQKDGSSDSVIKRTVVSSYLQLQDLLGDFEHPCVMDC 581


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 172 SINKTVKKDKDADNLLDQYEDYEPAEYQE 258
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 172 SINKTVKKDKDADNLLDQYEDYEPAEYQE 258
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 172 SINKTVKKDKDADNLLDQYEDYEPAEYQE 258
           S+N   KK  D   LL  Y D+  A+Y +
Sbjct: 89  SLNVISKKVGDGGPLLQPYPDWSFAKYDD 117


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,761
Number of Sequences: 438
Number of extensions: 5091
Number of successful extensions: 22
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)