Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B23
         (566 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.28 
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.66 
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   2.6  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   2.6  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   2.6  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           28   4.6  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   4.6  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   28   6.1  
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   8.1  

>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 242 YIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQSVGHEFASANS 96
           +I  N  +F   + DLG+A ++   +  + +H L R Q+VGH FA   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 395 FARGPLLLVQAVAG*PVLGLELLGQIECVVDQSESS*FATSEVCLETEYEHYIGSNLVHF 216
           F +G   L + V    ++GLEL  +I+ ++D++ S        CL +E   +   N   F
Sbjct: 56  FFQGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACLPSEVPAF--CNTERF 113

Query: 215 GELLTDLGLA 186
           G LL D+  A
Sbjct: 114 GLLLVDVRCA 123


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 342 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 434
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 315  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 431
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 342 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 434
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +2

Query: 170 RKTNCQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQ 349
           R+T+   DR    A+ NV   S   V++R  D ++   ++ ++ D R + SGQ+V   ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335

Query: 350 VSPPRPVREEEAHAQT 397
            S   P    E  AQT
Sbjct: 336 QSTHGPALPWEELAQT 351


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 218 FGELLTDLGLADSWFSWM*NIANHLLA 138
           FGEL+ D G + + F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 268  FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 149
            F+  PN   ++  TL    ++ S  R+ V+ +VG PGC  S T
Sbjct: 904  FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 339 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 428
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 265 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 116
           V+  NT  ++ +T     +F  I +++T     C++S TI +  NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,706,074
Number of Sequences: 59808
Number of extensions: 351125
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1337207630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)