Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B21
         (594 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe...    25   6.3  
SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyc...    25   8.3  

>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
 Frame = -3

Query: 340 VCYTYIILCTYLFSIIYCYFILFNNI--H**YTRGNYVFTFXLLQYPAYVP*HFKLIIFY 167
           +C++      Y    I  +F  F  +  H  Y RGN+VFT     YP     + KL +  
Sbjct: 253 LCWSLPYFQHYDLRFIASFFTQFYRLRLHQVYPRGNWVFTCLNGYYP-----YLKLTLLV 307

Query: 166 CVVXEKMSQTTLLLVCNTYFK 104
             +        L L+ + Y+K
Sbjct: 308 GFLFRLFLVYLLFLIISAYYK 328


>SPCC285.08 |ret2||coatomer delta subunit Ret2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = -1

Query: 141 KPLYC*YVILISNISSQLVEYTNTLRLSS 55
           +PL   Y++LI+N+ S +++  +TL L S
Sbjct: 59  QPLDELYIVLITNLQSNILQDIDTLHLLS 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,963,433
Number of Sequences: 5004
Number of extensions: 35279
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)