Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B21
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   5.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.1  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   9.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +2

Query: 23  NHCNXNXSKKKELSRKVFVYSTNWLDMFEISITY 124
           N+   + S+ KE + + F     WL  F +  TY
Sbjct: 387 NNSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTY 420


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 340 VCYTYIILCTYLFSIIYCYFILFNNI 263
           VCY   +    LF IIY Y+ +   +
Sbjct: 218 VCYGIWVYFVPLFLIIYSYWFIIQAV 243


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 340 VCYTYIILCTYLFSIIYCYFILFNNI 263
           VCY   +    LF IIY Y+ +   +
Sbjct: 94  VCYGIWVYFVPLFLIIYSYWFIIQAV 119


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 328 YIILCTYLFSIIYCYFILFNNIH 260
           Y+I    L SI  C  ++  N+H
Sbjct: 310 YLIFAMILVSISICVTVVVLNVH 332


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 328 YIILCTYLFSIIYCYFILFNNIH 260
           Y+I    L SI  C  ++  N+H
Sbjct: 310 YLIFAMILVSISICVTVVVLNVH 332


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -1

Query: 306 YLVLFTAILFYLTIFI 259
           YL+  + I FYL +F+
Sbjct: 206 YLIFSSTISFYLPLFV 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,106
Number of Sequences: 438
Number of extensions: 2365
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)