Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B19
         (634 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula...    27   2.3  
SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyce...    27   3.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   3.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   3.9  
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy...    26   5.2  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   9.1  

>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
           Prp45|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = +1

Query: 97  RSSANTRGFRDELRAGRITAHPERTRLGEDGEMDGSPEERSENRHRRLRETFRVNSSG 270
           RS++ +   R   RAG  + H E     ED E     +E    R R+  +  R++  G
Sbjct: 355 RSTSVSSEERSRSRAGSFSHHSESENEDEDSEAFRRRQELRRERRRQAEKDLRLSRMG 412


>SPAC25G10.03 |zip1||transcription factor Zip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 135 SSWKNHCSPRADPSRRGWRNGRKPRG---KVRKST*TFTGNLPSKQLRELEHVRSLSKEL 305
           SS+K   SP A+  R    +  +      K R++T         K+L+E +  R+ +KEL
Sbjct: 241 SSYKGAQSPNANSKRTKATSAIRTAAEEDKRRRNTAASARFRIKKKLKEQQLERT-AKEL 299

Query: 306 QDNLHELETAVRIADVEN 359
            + +  LET VR  ++EN
Sbjct: 300 TEKVAILETRVRELEMEN 317


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 107 QTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQRKG 217
           Q +A L  N+E E   LTQ   + E    W   + +G
Sbjct: 179 QEKASLQTNYEFELQKLTQKNSILENNNTWLSRELQG 215


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
 Frame = +3

Query: 297 KELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEE 476
           +EL+++  +L+  VR+   EN  +     + +  +D        LN       L + ++ 
Sbjct: 345 QELRNSFQQLQELVRVVLHENGRVTRLVDVSNTLDD--------LNKDMRFHKLSEVRQH 396

Query: 477 EK--RRLTKDGRISLKASRVIEKVV 545
               +  TKD  ++  ASRVIEK+V
Sbjct: 397 VNTLKEATKDDELAALASRVIEKIV 421


>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1019

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = +3

Query: 441 YGDEDLVDAKEEEKRR 488
           YGDED ++ ++EE+RR
Sbjct: 764 YGDEDELEQEQEERRR 779


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 294 SKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKE 473
           S+ L DN+  L +  R A    +  +     L  SED EF   +   + +   DL   K+
Sbjct: 60  SESLDDNISALNSLQRSASSSEKGSDEDNEKLGSSEDDEF---DDDFDTWEQVDLSPNKQ 116

Query: 474 EEKRRL 491
           E+K+ L
Sbjct: 117 EDKKDL 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,866
Number of Sequences: 5004
Number of extensions: 44833
Number of successful extensions: 178
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)