Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B19
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0700 - 18836757-18837329 31 0.58
05_01_0035 - 232656-232781,233212-233322,233419-233563,233749-23... 31 0.76
10_08_0961 + 21869612-21869773,21869869-21869956,21870047-218702... 29 2.3
05_05_0299 - 23930657-23932627 29 3.1
04_04_0935 - 29509135-29511732 29 3.1
12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272 29 4.1
05_07_0328 + 29286109-29286120,29286982-29287146,29288427-292885... 29 4.1
03_06_0199 + 32310272-32311432 29 4.1
01_02_0130 - 11424904-11425142,11425295-11425416,11425461-114255... 29 4.1
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 28 5.4
08_02_0203 - 14231134-14231907 28 7.1
12_02_0703 + 22282219-22282430,22286054-22287620,22287751-222883... 27 9.4
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617 27 9.4
05_07_0101 - 27690927-27691208,27691695-27692474 27 9.4
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 27 9.4
03_04_0216 + 18695292-18696139,18696217-18696339,18697027-186972... 27 9.4
02_04_0364 + 22374735-22374749,22374903-22375076,22377858-223779... 27 9.4
>04_03_0700 - 18836757-18837329
Length = 190
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 178 GEDGEMDGSPEERSENRHRRLRET 249
GEDG G PE R E+ HR+ R T
Sbjct: 137 GEDGRQPGEPEARGESGHRQGRST 160
>05_01_0035 -
232656-232781,233212-233322,233419-233563,233749-233882,
234341-234412,234485-234548,234632-234699,234894-235129,
236857-237166,237495-238460,238752-238931,239041-239346,
239593-239727,239810-240046,240120-240308,240521-240709,
240929-241024,241117-241323,241700-241893,242979-243216
Length = 1400
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 255 SKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLN 434
S QLR+ V+ + + L+D HE+ +++ ++ ++ + P L Y F+ N+ N
Sbjct: 363 SCQLRQPNQVKKIFEFLKDGFHEVSSSLDLSFDDDSVADEKIPFLAYLA--SFLKENKYN 420
Query: 435 NC 440
C
Sbjct: 421 PC 422
>10_08_0961 +
21869612-21869773,21869869-21869956,21870047-21870277,
21870371-21870538,21870808-21871001,21871151-21871234,
21871315-21871434,21871621-21871714,21871813-21871973,
21873237-21873313,21873738-21873932,21874487-21874559,
21874635-21874721,21874906-21875043,21875181-21875383,
21875469-21875631,21875861-21875992
Length = 789
Score = 29.5 bits (63), Expect = 2.3
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Frame = +3
Query: 255 SKQLRELEHVRSLSKELQDNLHELETAVR-IADVENQA-----MNPTAPMLDYSEDHEFV 416
+ Q REL V+ LS EL++++ ELE + R +A ++ Q MN +AP + + V
Sbjct: 203 NNQSRELHEVKCLSGELEESMAELEESRRKLAVLQLQTGGGSLMNTSAP----NGVNGSV 258
Query: 417 SANRLNN-CYGDEDLVDAKEEEK 482
S ++ ++ G DL DA EE K
Sbjct: 259 STDKSSDKGMGWRDLKDAVEEAK 281
>05_05_0299 - 23930657-23932627
Length = 656
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +1
Query: 142 GRITAHPERTRLGEDGEMDGSPEE-RSENRHRRLRE 246
G ++ PE+ E G+ DG + RSE R RR RE
Sbjct: 599 GPASSEPEKELPNEQGDADGKAKSTRSERRKRRRRE 634
>04_04_0935 - 29509135-29511732
Length = 865
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +2
Query: 92 YFVQVQTRAVLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDIDVY 241
YF + R V+ N + + L+QSG V E + E RKG ++D Y
Sbjct: 226 YFEDMAERDVVSWNMMI--AALSQSGRVREALGLVVEMHRKGVRLDSTTY 273
>12_02_0876 - 23926691-23928090,23928184-23928919,23929048-23929272
Length = 786
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 150 HCSPRADPSRRGWRNGRKPRGKVR 221
H R+ PS+RG RNG + RG+ R
Sbjct: 701 HTLGRSTPSKRGGRNGSQSRGRRR 724
>05_07_0328 + 29286109-29286120,29286982-29287146,29288427-29288589,
29288625-29288903,29289047-29289122,29289725-29289787,
29292116-29292164,29292413-29292504,29293017-29293068,
29293209-29293271,29293382-29293431,29293941-29294016,
29294444-29294656,29294763-29294869,29294966-29295074,
29295489-29295689,29295773-29296033,29296154-29296171,
29296287-29296397,29296755-29297030,29297108-29297382,
29297814-29298165,29298371-29298655,29298715-29299261,
29301658-29301781,29301871-29301946,29302062-29302136,
29302300-29302353,29302833-29302892,29302977-29303093,
29303228-29303361,29303480-29303682,29303879-29303976,
29304358-29304461,29304537-29304702,29304803-29304925,
29305047-29305129,29305217-29305358,29305523-29305549,
29305784-29305854,29305930-29306518
Length = 2046
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 324 LETAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEEEKRRL-TKD 500
+E + +EN + + D S+ + + + C +EDL EE +R + +D
Sbjct: 1905 IEPQLESVSLENGPVEEAGDLADVSKQTDSNTEDEKLLCTEEEDLSKEAEESERHVDVRD 1964
Query: 501 GRISLKASRVIE 536
G++ ++A E
Sbjct: 1965 GQVDIQAEDAAE 1976
>03_06_0199 + 32310272-32311432
Length = 386
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 326 RNRCP-HRRRGEPGDEPDSTHAGLLRRPRIR 415
R RCP HRR P GLLRRPR R
Sbjct: 117 RVRCPCHRRFAHPRPARRRLRQGLLRRPRQR 147
>01_02_0130 -
11424904-11425142,11425295-11425416,11425461-11425546,
11425642-11425858,11426788-11426832,11428385-11428593,
11428706-11428936
Length = 382
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 163 ERTRLGEDGEMDGSPEERSENRHRRLRETFRVNS 264
E +RLGED + + + + SE+ H LR VNS
Sbjct: 160 EMSRLGEDSDGESAQDMSSESDHEHLRCRCLVNS 193
>11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +2
Query: 101 QVQTRAVLGMNFELEE-SLLTQSGP-VSERMEKWTEAQRKGQKIDIDVYGKPSE*TAQGT 274
+V++ A + +E +LL + P V K E + K Q D+D +G P +
Sbjct: 1063 EVKSAAAERLKISMERIALLKAAKPKVPPAKTKEEEEEEKKQNEDLDEFGNPKGPSTLSK 1122
Query: 275 GTREELEQRA 304
T EE E RA
Sbjct: 1123 LTAEEAEHRA 1132
>08_02_0203 - 14231134-14231907
Length = 257
Score = 27.9 bits (59), Expect = 7.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTA 380
G PS LR VRS + ++D +HEL A R + ++ + P A
Sbjct: 108 GEPPSPHLRLGYFVRSQERIIEDLMHELHRARRRIAILDREVEPRA 153
>12_02_0703 +
22282219-22282430,22286054-22287620,22287751-22288371,
22288434-22288484
Length = 816
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTA 380
GN P +L L + SLSK ++ + ELE + + + AMNP +
Sbjct: 730 GNYPKAELESL--MESLSKASKE-MFELEAFMMFSSSDQSAMNPVS 772
>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
Length = 988
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +3
Query: 342 IADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEE 476
+ D+ ++ + + PM DY +DH + LN D L++ +E
Sbjct: 235 LRDILSEVLYTSNPMSDYQKDHFWRIKENLNQPLEDHQLINMIKE 279
>05_07_0101 - 27690927-27691208,27691695-27692474
Length = 353
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 444 RSNCSADSRTRIRGLRSSPA-WVLSGSSPGSPRLRCGQRFLIHAN 313
RSNC+A + +RG SSPA WV P S + G + N
Sbjct: 220 RSNCTAGLQILLRGDYSSPARWVPVPPDPDSFFVNVGDSLQVLTN 264
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 390 DYSEDHEFVSANRLNNCYGDEDLVDAKEEEKR 485
D DH+ + N+ YG ED +AK +EK+
Sbjct: 249 DSDSDHDDNKKKKKNSRYGSEDDSEAKYDEKK 280
>03_04_0216 +
18695292-18696139,18696217-18696339,18697027-18697222,
18697361-18697519
Length = 441
Score = 27.5 bits (58), Expect = 9.4
Identities = 24/102 (23%), Positives = 43/102 (42%)
Frame = +1
Query: 10 RPMIRRSEAGSSTCDELRX*N*LNKNFIFRSSANTRGFRDELRAGRITAHPERTRLGEDG 189
RP RRS+ G + +E + ++ RS ++ + + +A P +R G+ G
Sbjct: 194 RPPKRRSKDGGALLNEADV-SPEKEDASTRSEQGSQDYSGKFKASN-DGGPSSSRRGDRG 251
Query: 190 EMDGSPEERSENRHRRLRETFRVNSSGNWNT*GA*AKSCRII 315
E + ++ ++ R S GN N A + RII
Sbjct: 252 EQISGSSDSNDQGEEEVKVEGRATSDGNANKRHVPAPAQRII 293
>02_04_0364 +
22374735-22374749,22374903-22375076,22377858-22377935,
22379270-22380407,22380507-22380901,22382230-22382416,
22382872-22382942,22383705-22383755
Length = 702
Score = 27.5 bits (58), Expect = 9.4
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Frame = +3
Query: 246 NLPSKQLRELEHVRSLS-----KELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
NL S Q++E E +SL+ KELQ+ LH + V +E Q N + E
Sbjct: 84 NLSSYQIKEAES-QSLANINKIKELQEQLHGAQDTVASLQIELQRSNTELEQARSTLAEE 142
Query: 411 FVSANRLNNCYGDEDLVDAKEEEKRRLTKDGRISLKASRVIEK 539
N L +C ++ ++ L GR+S K+ ++
Sbjct: 143 --RRNNLRSCNKINSNKNSSSSSRKHL--QGRVSSKSKNTAKE 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,448
Number of Sequences: 37544
Number of extensions: 305723
Number of successful extensions: 1033
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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