Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B19
(634 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065) 31 1.0
SB_36510| Best HMM Match : TPR_3 (HMM E-Value=4.3) 30 1.4
SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1) 29 3.1
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32) 28 5.5
SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_41880| Best HMM Match : TolA (HMM E-Value=2.2) 28 5.5
SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 28 7.2
SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35) 28 7.2
SB_23812| Best HMM Match : Filament (HMM E-Value=0.05) 28 7.2
>SB_14987| Best HMM Match : TPR_2 (HMM E-Value=0.0065)
Length = 1171
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +2
Query: 116 AVLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDI-DVYGKP 250
AVL NF+L ES L + G V E +E + E + + I + + G P
Sbjct: 253 AVLDKNFKLAESYLLEQGHVDEAIEMYQELHKWDEAIAVAEATGHP 298
>SB_36510| Best HMM Match : TPR_3 (HMM E-Value=4.3)
Length = 57
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 116 AVLGMNFELEESLLTQSGPVSERMEKWTEAQRKGQKIDI 232
AVL NF+L ES L + G V E +E + E + + I +
Sbjct: 15 AVLDKNFKLAESYLLEQGHVDEAIEMYQELHKWDEAIAV 53
>SB_57583| Best HMM Match : DUF572 (HMM E-Value=2.1)
Length = 638
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +3
Query: 258 KQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHEFV 416
K + LEH R+ +Q+ L+ ++T D++ + + T+ + Y EDH+ +
Sbjct: 464 KAVSRLEHARTRFSTIQE-LYVIKTQPSPPDIQTRDSSYTSGVCCYGEDHDVI 515
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Frame = +3
Query: 267 RELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLD------YSEDHEFVSANR 428
RE+ ++EL +LH +T V + EN+ + M++ Y HE S R
Sbjct: 500 REVSEKTKENQELTQSLHASQTRVMSLETENRILENQVRMMEESNKDLYKNLHEIRSKLR 559
Query: 429 LNNCYGDEDLVDAKEEEKRRLTK 497
+ DE L K E R+L++
Sbjct: 560 IQESKVDE-LRIQKSESVRKLSQ 581
>SB_59454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 DHEFVSAN-RLNNCYGDEDLVDAKEEEKRRLTKDGRISLKASRVIEKVVL**RSVKSEDF 578
DH + A + NCY + + + + L K R S + R++EK L + K +D+
Sbjct: 101 DHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDRSSREFRRLLEKAKLELKKSKRKDY 160
Query: 579 F 581
+
Sbjct: 161 Y 161
>SB_42340| Best HMM Match : DnaJ (HMM E-Value=3.2e-32)
Length = 264
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 402 DHEFVSAN-RLNNCYGDEDLVDAKEEEKRRLTKDGRISLKASRVIEKVVL**RSVKSEDF 578
DH + A + NCY + + + + L K R S + R++EK L + K +D+
Sbjct: 101 DHTYTKAYLKRANCYMESEKYEEAVRDYESLCKKDRSSREFRRLLEKAKLELKKSKRKDY 160
Query: 579 F 581
+
Sbjct: 161 Y 161
>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2806
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +3
Query: 279 HVRSLSKELQDNLHELETAVRIADVENQAMNPT---APMLDYSEDHEFVSANRLNNCYGD 449
HV + K+ + ++++E + V+NQ + T +LD +++ V + N +
Sbjct: 1959 HVHASDKDQEQEMYKIEIQAMDSSVDNQKVGSTHVIVTLLDINDNSPIVKPKKFNVTVQE 2018
Query: 450 EDLVDA 467
+ LV+A
Sbjct: 2019 DLLVNA 2024
>SB_41880| Best HMM Match : TolA (HMM E-Value=2.2)
Length = 374
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/131 (19%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Frame = +3
Query: 159 PRADPSRRGWR-NGRKPRGKVRKST*TFTGNLPSKQLR--ELEHVRSLSKELQDNLHELE 329
PR+ S+R KP+G++++ + LP + + E+ + S+ + +N +
Sbjct: 53 PRSIESQREEPCTAEKPKGEIQEDKIDSSVTLPCELQKDEEVNEIHSVDNKTDENREDKA 112
Query: 330 TAVRIADVENQAMNPTAPMLDYSEDHEFVSANRLNNCYGDEDLVDAKEEEKRRLTKDGRI 509
A+ + T + + + + G E+ D+K+++KR+ +D +
Sbjct: 113 VIKHSAECVESTESSTESRTELTSKAILSTEEETS---GAEEHPDSKKKQKRKSKEDLQP 169
Query: 510 SLKASRVIEKV 542
S +++R+ E V
Sbjct: 170 SRRSNRIHESV 180
>SB_22224| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1106
Score = 28.3 bits (60), Expect = 5.5
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Frame = +3
Query: 264 LRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPML-DYSEDHE-FVS----AN 425
L + V + +E+ D++ ++ V+ A++E + P+ D+ +D E F S AN
Sbjct: 857 LHKSSEVEPIQEEMYDDVDQVADQVK-AELERNTFFLSEPISEDFYDDLETFTSTLPAAN 915
Query: 426 RLNNCYGDEDLVD 464
L C GDED D
Sbjct: 916 GLGACAGDEDFGD 928
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Frame = +3
Query: 288 SLSKELQDNLHELETA---VRIAD----VENQAMNPTAPMLDYSEDHEFVSANRLNNCYG 446
S +E +D+ E++T +++A +++ ++ A + S+ + NR N+ G
Sbjct: 135 SFGEEAEDDEEEVKTVSKKMKMASSHDILDDPLLSKEAAVPQESQPVKETERNRKNSSSG 194
Query: 447 DEDLVDAKEEEK 482
D+D D K+EEK
Sbjct: 195 DDDSDDEKQEEK 206
>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = -2
Query: 492 SVSVFLLLWRQPSLRRRSN---CSADSRTRIRGLRSSPAWVLSGSSPGSPRLRC-GQRFL 325
+V+VF L WR+ SLR ++N S + GL + P + S + C G RFL
Sbjct: 21 NVTVFFLFWRRSSLRVKANYILASLAFSDCMSGLLAIPLLIACSSMSVYDEVVCVGMRFL 80
>SB_58958| Best HMM Match : Baculo_PEP_C (HMM E-Value=0.35)
Length = 1076
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 139 AGRITAHPERTRLGEDGEMDGSPEERSENRHR 234
+GR+ A+ ER + ++ G P+E E R R
Sbjct: 984 SGRLAANAERAQQTSGAQLSGCPQELCERRQR 1015
>SB_23812| Best HMM Match : Filament (HMM E-Value=0.05)
Length = 307
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +3
Query: 234 TFTGNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAM 368
T N K L EL+ R+ ++ELQ LH+LE + D + +A+
Sbjct: 44 TTAQNHYKKVLSELQSCRTENQELQGRLHQLELNSGMRDSDLRAV 88
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,003,563
Number of Sequences: 59808
Number of extensions: 342089
Number of successful extensions: 1187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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