Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B19
(634 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X13939-1|CAA32122.1| 328|Homo sapiens laminin B2 protein. 33 0.84
M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein. 33 0.84
M27654-1|AAA59489.1| 217|Homo sapiens laminin B2 protein. 33 0.84
J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein. 33 0.84
AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (forme... 33 0.84
AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (forme... 33 0.84
AK025111-1|BAB15069.1| 347|Homo sapiens protein ( Homo sapiens ... 32 1.9
BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 30 5.9
BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein. 30 5.9
BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA methyltransfe... 30 5.9
AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens ... 30 5.9
AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine... 30 5.9
AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein. 30 5.9
X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein. 30 7.8
X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein... 30 7.8
M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-bindi... 30 7.8
L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A pro... 30 7.8
BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain prote... 30 7.8
BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain prote... 30 7.8
BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain prote... 30 7.8
>X13939-1|CAA32122.1| 328|Homo sapiens laminin B2 protein.
Length = 328
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 244 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 299
>M55210-1|AAA59492.1| 1609|Homo sapiens laminin B2 chain protein.
Length = 1609
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 1525 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 1580
>M27654-1|AAA59489.1| 217|Homo sapiens laminin B2 protein.
Length = 217
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 133 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 188
>J03202-1|AAA59488.1| 1609|Homo sapiens LAMB2 protein.
Length = 1609
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 1525 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 1580
>AL450304-5|CAI14877.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 1525 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 1580
>AL354953-3|CAH70981.1| 1609|Homo sapiens laminin, gamma 1 (formerly
LAMB2) protein.
Length = 1609
Score = 33.1 bits (72), Expect = 0.84
Identities = 14/56 (25%), Positives = 29/56 (51%)
Frame = +3
Query: 243 GNLPSKQLRELEHVRSLSKELQDNLHELETAVRIADVENQAMNPTAPMLDYSEDHE 410
G L + L +L + + +D + + +++D+EN+A A ++DY+ D E
Sbjct: 1525 GQLDTVDLNKLNEIEGTLNKAKDEMKVSDLDRKVSDLENEAKKQEAAIMDYNRDIE 1580
>AK025111-1|BAB15069.1| 347|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21458 fis, clone COL04713. ).
Length = 347
Score = 31.9 bits (69), Expect = 1.9
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +1
Query: 118 GFRDELRAGRITAHPERTRLGEDGEMDGSPE 210
G + R GRI PE G+ G DGSPE
Sbjct: 313 GLEKKARTGRIERRPETRSGGDSGSRDGSPE 343
>BC040126-1|AAH40126.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>BC018302-1|AAH18302.1| 630|Homo sapiens TRMT1 protein protein.
Length = 630
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>BC002492-1|AAH02492.1| 659|Homo sapiens TRM1 tRNA
methyltransferase 1 homolog (S. cerevisiae) protein.
Length = 659
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>AK000251-1|BAA91031.1| 659|Homo sapiens protein ( Homo sapiens
cDNA FLJ20244 fis, clone COLF6450. ).
Length = 659
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>AF196479-1|AAG28495.1| 659|Homo sapiens N2,N2-dimethylguanosine
tRNA methyltransferase protein.
Length = 659
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>AC005546-2|AAC33150.1| 656|Homo sapiens R29425_1 protein.
Length = 656
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Frame = +2
Query: 23 EGLKRAQVRVTNYAVKIN*IRTLYFVQVQTRAV--LGMNFELEE-SLLTQSGPVSERMEK 193
EGL + +R +A+++ +R++ TRAV + N +L + + L Q RM
Sbjct: 158 EGLAASGLRSIRFALEVPGLRSVVANDASTRAVDLIRRNVQLNDVAHLVQPSQADARMLM 217
Query: 194 WTEAQRKGQK---IDIDVYGKPS 253
+ + QR ++ ID+D YG P+
Sbjct: 218 Y-QHQRVSERFDVIDLDPYGSPA 239
>X95325-1|CAA64631.1| 372|Homo sapiens DNA-binding protein protein.
Length = 372
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
>X72712-1|CAA51261.1| 372|Homo sapiens cold shock domain protein A
protein.
Length = 372
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
>M24069-1|AAA35749.1| 412|Homo sapiens protein ( Human DNA-binding
protein A (dbpA) gene, 3' end. ).
Length = 412
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 318 RRSRVLPHPNRIQAGEIGEMKDGVPE 343
>L29071-1|AAA79243.1| 342|Homo sapiens DNA-binding protein A
protein.
Length = 342
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
>BC021926-1|AAH21926.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
>BC015564-1|AAH15564.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
>BC008801-1|AAH08801.1| 372|Homo sapiens cold shock domain protein
A protein.
Length = 372
Score = 29.9 bits (64), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 136 RAGRITAHPERTRLGEDGEM-DGSPE 210
R R+ HP R + GE GEM DG PE
Sbjct: 248 RRSRVLPHPNRIQAGEIGEMKDGVPE 273
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,760,049
Number of Sequences: 237096
Number of extensions: 1632163
Number of successful extensions: 4537
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4537
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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