Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B19
         (634 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   1.1  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   4.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   4.3  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   5.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.7  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = -2

Query: 450 RRRSNCSADSRTRIRGLRSSPAWVL--SGSSPGSPRLRCGQRFLIHANYPAAL 298
           RR++NC    +  +   +SSP +V     S+  SP L  G+   + A +   L
Sbjct: 342 RRKNNCPLHCKPELGQSQSSPKFVARREESNSSSPSLDLGKEGGLEAQWSRVL 394


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 297 KELQD--NLHELETAVRIADVENQAMNPTAPMLDYSEDHEF---VSANRLNNCYGDEDLV 461
           +EL+D    +     + I+ +EN ++N   P L  SE H     +  N   +   D+D +
Sbjct: 168 EELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 227

Query: 462 D 464
           D
Sbjct: 228 D 228


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 297 KELQD--NLHELETAVRIADVENQAMNPTAPMLDYSEDHEF---VSANRLNNCYGDEDLV 461
           +EL+D    +     + I+ +EN ++N   P L  SE H     +  N   +   D+D +
Sbjct: 206 EELRDLKETYPFNPVLFISSLENISLNGIDPELTESEQHRLQNRLYTNDSTSSKTDDDSI 265

Query: 462 D 464
           D
Sbjct: 266 D 266


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 421 ADTNSWSSE*SSMGAVGFIAWFSTSAMRT 335
           AD  +   + + +GA GFI W S+  + T
Sbjct: 313 ADLEATLRKITDLGADGFIIWGSSDDINT 341


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 335 CPHRRRGEPG 364
           CPHRRR   G
Sbjct: 536 CPHRRRANSG 545


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,347
Number of Sequences: 438
Number of extensions: 2833
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)