Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B18
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit |Sc...    66   4e-12
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.95 
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    28   1.7  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    27   2.2  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    27   2.9  
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi...    26   5.0  
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz...    26   5.0  
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    26   6.7  

>SPAC6F6.09 |||NuA4 histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 138

 Score = 66.5 bits (155), Expect = 4e-12
 Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 3/109 (2%)
 Frame = +1

Query: 289 ELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTXSKADK 468
           EL E+++++  +  +L  LE  IY  EGSYLE T   GNIIRG++  L  N S      +
Sbjct: 24  ELHEMIEKRQLLETSLIGLEDSIYRLEGSYLEKTSGTGNIIRGFEGLLKNNASNL----R 79

Query: 469 RNRKFKEAERLFSKSSITS---MAAVSGLVDAAEAKNERNSETESQTNE 606
           R   + E++RLFS SS++S    +    L D+ E    R  + ES ++E
Sbjct: 80  RRADYSESDRLFSLSSLSSPHTRSPAYDLDDSTETSRRRKRKNESDSHE 128


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +1

Query: 523 SMAAVSGLVDAAEAKNERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIASKP 702
           S AAVSGL+ +    +  NS + +  +  S++   +SN        +++ G   S     
Sbjct: 501 SAAAVSGLIGSFMGSSSNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGS- 559

Query: 703 SGKQNTN 723
           SG  N N
Sbjct: 560 SGNNNNN 566


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 160 KTQVTTIISMVISPQSPIDDAQSVQTXRTNMATKQSSVADTXAELAELVKRKAEVAETL 336
           K  +  ++++  S Q P   A   +  R  MATK SS AD+   +  L + +A +  TL
Sbjct: 260 KAGLAEVLNISTSQQKPKTTALDYEVFRHEMATKFSSFADSYYPV-PLDREQAHILPTL 317


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
 Frame = +1

Query: 568 NERNSETESQTNEDSSDTQ-------ISSNLNLGG-LNHTTIHGSTESIASKPSGKQNTN 723
           N  N+ T SQ + DS +         +S   N+ G  NH   HG+T    SK     N  
Sbjct: 365 NHNNTTTSSQVHPDSRNPDPKAAPKAVSQKTNVDGHRNHEAKHGNTVQNESKSQKSSNKE 424

Query: 724 G 726
           G
Sbjct: 425 G 425


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +1

Query: 442 KSTXSKADKRNRKFKEAERLFSKSSITSMAAV-SGLVDAAEAKNERNSETESQTNEDSSD 618
           +S  S A    +K K+    FS +  T+     SG+ D A+   +  S    + + + SD
Sbjct: 582 ESMISTAQAAMQKAKQIAINFSSNLATNEDVTNSGMPDIADVSLKSQSHVPPRISSNHSD 641

Query: 619 TQISSN 636
           T + SN
Sbjct: 642 TSVKSN 647


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
 Frame = +1

Query: 403  NIIRGWDRYLTT--NKSTXSKADKRNRKFKEAERLFSKSS 516
            ++++ + R LTT  N +    ++K+N    +AERLF K++
Sbjct: 1204 HVVQSFCRLLTTWMNPNLMHDSNKKNSSLTDAERLFVKAT 1243


>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 451

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 505 SKSSITSMAAVSGLVDAAEAKNERNSETESQTN-EDSSDTQISSNLNLGGLNHTTIHGST 681
           S+SS     + S   D+ +  +  +S++ES+++ EDS  T  SS+ +    +      + 
Sbjct: 263 SESSSKDSDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTD 322

Query: 682 ESIASKPSGKQNTNGPLDXTLTS 750
            + + + S + +TN       TS
Sbjct: 323 TTTSGEVSAQSSTNSTSSEESTS 345



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 18/97 (18%), Positives = 40/97 (41%)
 Frame = +1

Query: 433 TTNKSTXSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAAEAKNERNSETESQTNEDS 612
           ++   + S+ +  +    ++E   S     S ++ S     + +K+  +S   S + +DS
Sbjct: 224 SSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDS 283

Query: 613 SDTQISSNLNLGGLNHTTIHGSTESIASKPSGKQNTN 723
           S     S       +  +   S++S +S  S   N+N
Sbjct: 284 SSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSN 320


>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 669

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/20 (45%), Positives = 17/20 (85%)
 Frame = +2

Query: 644 LEVLTIRQFMVPLKALLLSH 703
           +E+ T+RQF +P+K L+L++
Sbjct: 556 MELATVRQFDIPVKILILNN 575


>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
 Frame = +1

Query: 319 EVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTXSKADKRNRKFKEAER 498
           E  +  A+++R+I A    Y +  +        +++  T  K   ++     ++ K+  R
Sbjct: 449 EQFKRFAHMQREIVAMSEQYQKSLEDCQKAKSRYEQLETLFKDKCTENKHYEQETKDLAR 508

Query: 499 LFSKSSITSMAAVSGLVDAAEAKNERNSETESQTNEDSSDTQ--ISSNL 639
                        +G+V   +++ + NS  E    ED +DT   ISS L
Sbjct: 509 QVQVLLHELDLCENGIVLGVDSRKKINSYVEKSLTEDETDTDQIISSRL 557


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.126    0.348 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,941
Number of Sequences: 5004
Number of extensions: 44901
Number of successful extensions: 96
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)