Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P29_F_B18
(756 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 77 2e-14
01_01_0936 + 7384895-7385047,7385831-7385931,7386499-7386568,738... 76 4e-14
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 40 0.002
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354... 33 0.32
07_01_0346 - 2501825-2501908,2502143-2502244,2502623-2502646,250... 31 0.99
03_01_0460 - 3537608-3538228,3538457-3538669,3539938-3540051 31 0.99
03_03_0016 - 13761007-13761489,13761929-13762096,13763086-137631... 30 1.7
05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816... 29 3.0
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 29 3.0
02_03_0199 + 16263549-16263644,16264941-16265899,16267140-162677... 29 4.0
07_01_0287 - 2094333-2094542,2094719-2095999 28 7.0
02_02_0500 - 10993675-10994067,10994434-10995738 28 7.0
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 76.6 bits (180), Expect = 2e-14
Identities = 40/120 (33%), Positives = 77/120 (64%), Gaps = 3/120 (2%)
Frame = +1
Query: 253 ATKQSSVADTXAELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYL 432
A ++ A+ A L+ L+ ++A++ E L ++ERQ+Y E +YL+++ +G++++G++ +L
Sbjct: 511 APSGAAAANPTAMLSALMSKRAKLQEELRSIERQVYEMETTYLQESNQFGSVLKGFESFL 570
Query: 433 TTNKSTXSKADKRNRKFKEAERLFSKSSITSMAA---VSGLVDAAEAKNERNSETESQTN 603
+++K+T + KR+RKF+ ERLFS SS+TS A ++G D E + R+ + N
Sbjct: 571 SSSKNTSNL--KRSRKFQADERLFSLSSVTSPAVDEHMAGRDDGREYGSGRSKGATTPAN 628
>01_01_0936 +
7384895-7385047,7385831-7385931,7386499-7386568,
7386725-7386752,7386791-7386892,7387070-7387164
Length = 182
Score = 75.8 bits (178), Expect = 4e-14
Identities = 35/93 (37%), Positives = 67/93 (72%)
Frame = +1
Query: 253 ATKQSSVADTXAELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYL 432
A ++ A+ A L+ L+ ++A++ E L ++ERQ+Y E +YL+++ +G++++G++ +L
Sbjct: 18 APSGAAAANPTAMLSALMSKRAKLQEELRSIERQVYEMETTYLQESNQFGSVLKGFESFL 77
Query: 433 TTNKSTXSKADKRNRKFKEAERLFSKSSITSMA 531
+++K+T + KR+RKF+ ERLFS SS+TS A
Sbjct: 78 SSSKNTSNL--KRSRKFQADERLFSLSSVTSPA 108
>07_03_0336 + 16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 39.9 bits (89), Expect = 0.002
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Frame = +1
Query: 244 TNMATKQSSVADTXAELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNIIRGWD 423
+++ ++ S + D + + + R A+ A+ N+ + + ++ + GNI+ G
Sbjct: 599 SSITSQDSKIGDGRSNIDGIANRDAKTADVKHNIRSVVNTYLRNF-DVKHNTGNIVDGGV 657
Query: 424 RYLTTNKSTXSKA--DKRNRKFKEAERLFSKSSITSMAAVS--GLVDAAEAKNERNSETE 591
++ T S A D ++ K + F S S++A + G D ++A+N + T
Sbjct: 658 KHSDLKPGTVSAANVDSKSISAKPSTGSFENSDAKSISAKTSTGSFDNSDARNIMKANTG 717
Query: 592 SQTNEDSSDTQISSN 636
N D DT + +N
Sbjct: 718 IVANNDIKDTDVQTN 732
>01_05_0799 +
25334460-25334994,25335060-25335236,25335325-25335447,
25335559-25335624,25335717-25336685,25336791-25336912,
25337156-25337549,25337888-25338009,25338253-25338646,
25338983-25339104,25339348-25339830,25340291-25340960,
25341713-25342224,25342484-25342540
Length = 1581
Score = 32.7 bits (71), Expect = 0.32
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 442 KSTXSKADKRNRKFKEAERLFSKSSITSM-AAVSGLVDAAEAKNERNSETESQTNEDSSD 618
++T ++RNRK +E R K +T++ +VS L A ERN + ++
Sbjct: 105 ETTKDAREERNRKQREY-RQKKKLGLTNLDGSVSSLTPVQPANEERNRKQREYRARKKAE 163
Query: 619 TQISSNLNLGGLNH-TTIHGSTES 687
+ I S N NH + +G+T S
Sbjct: 164 SNIVSGSNSESTNHNVSPYGTTYS 187
>07_01_0346 -
2501825-2501908,2502143-2502244,2502623-2502646,
2502693-2502819,2503122-2505109,2505804-2505821
Length = 780
Score = 31.1 bits (67), Expect = 0.99
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Frame = +1
Query: 232 QTXRTNMATKQSSVADTXAELAELVKRKAEVAETLANLERQIYAFEGSYLEDTQLYGNII 411
Q R +A K + D ++++ ++ + L RQ++ +G Y ED + I
Sbjct: 430 QNLRGLLAEKMKDIKDLSRQVSDASRKMSFQLSLEEKLSRQLHKIKGDY-EDLHIQSTIR 488
Query: 412 RGWDRYLTTNKSTXSKADKRNRKFKEAERLFSKSSITSM-AAVSGLVDAAEAKNERNSET 588
+ Y T K D RN A L + +TS+ AA+S A NE N
Sbjct: 489 D--EVYQTVTKRMFD--DYRNSLQDPA--LTYQEKVTSLEAALSEKETALRLANEENQRL 542
Query: 589 ESQTNEDSSDTQISSN 636
+ + ++ + I +N
Sbjct: 543 KEKLSKQEKEHGIQNN 558
>03_01_0460 - 3537608-3538228,3538457-3538669,3539938-3540051
Length = 315
Score = 31.1 bits (67), Expect = 0.99
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +1
Query: 91 GNKWHISVQKKNTPVLSDLLWNYKTQVTTIISMVISPQSPIDDAQSVQTXRTNMA-TKQS 267
G K H+SV+++ + VL +L W Y Q + + V+ ++ + D + + + +Q
Sbjct: 146 GRKIHVSVKQETSRVLGNLAWAYMQQGNFMAAEVVYRKAQMVDPDANKACNLALCLIEQR 205
Query: 268 SVADTXAELA 297
AD A LA
Sbjct: 206 RPADAEAVLA 215
>03_03_0016 -
13761007-13761489,13761929-13762096,13763086-13763130,
13763380-13763447,13763532-13763586,13763659-13763814,
13763904-13764002,13764792-13764872,13765513-13765636,
13765938-13766032,13766434-13766560,13766768-13766871,
13767278-13767359,13768012-13768049
Length = 574
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 553 AAEAKNERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIASKPSGKQNTNG 726
+ +AK+ + T +++ SS+L H T ST S + KP+ QN NG
Sbjct: 485 STKAKSPEVQSASNHTTNNAASVNTSSSLESNASTHVTNGKSTSSESQKPT--QNANG 540
>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
8165938-8166012,8166674-8166846,8168697-8168795,
8169002-8169161,8169321-8169464,8169551-8169723,
8169796-8169991,8170061-8170258,8170864-8171016,
8171838-8171959,8172037-8172136,8172221-8172316,
8172400-8172530,8173717-8173819,8174373-8174555,
8174632-8174724,8174818-8174853,8175672-8175773,
8176310-8176472,8176557-8176678,8176994-8177158,
8177667-8177849,8178679-8178831,8179136-8179288,
8179373-8179444,8179530-8179664,8179739-8179800,
8179999-8180096,8180628-8180737,8180832-8181005,
8181092-8181157,8181847-8181915,8181989-8182099,
8182418-8182558,8182638-8182766,8182864-8183029,
8183174-8183388,8184883-8185089,8185501-8185572,
8185897-8186010,8186090-8186281,8186489-8186569,
8186654-8186728,8186812-8186878,8187292-8187452,
8187943-8188116,8188209-8188337,8188421-8188504,
8188589-8188650,8188728-8188800,8189008-8189142,
8189790-8189960,8190054-8190319,8190440-8190458
Length = 2448
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +1
Query: 526 MAAVSGLVDAAEAKNERNSETESQTNEDSSDTQISSNLNLGGLNHTTIHGSTESIAS 696
+ AV+ L DA E NER ++ + + SS +L G +T HG+ E +AS
Sbjct: 2353 LQAVNQLGDANEVLNERAVAVMARMSHKLTGRDFSSGSSLSGAGSSTQHGN-EHLAS 2408
>03_05_0754 +
27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 29.5 bits (63), Expect = 3.0
Identities = 25/118 (21%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +1
Query: 277 DTXAELAELVKRKAEV-AETLANLERQIYAFEGSYLEDTQLYGNIIRGWDRYLTTNKSTX 453
D+ +AE + + E+ ++ LA+ E + E E LYGN++ ++ +T +S
Sbjct: 248 DSKTRMAEDFRSRLEMCSQALAHEEGRRKLLEAEMSELKHLYGNVVSDYEEARSTIESLA 307
Query: 454 SKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAAEAKNERNSETESQTNEDSSDTQI 627
+K D E +SS+ + ++ +A+ E+ +E + ++ + QI
Sbjct: 308 AKRD--------GEIASLRSSLAEKVTLLKEMEYGKARLEQENEDMRSSLKEHQEAQI 357
>02_03_0199 +
16263549-16263644,16264941-16265899,16267140-16267791,
16267895-16267981,16268253-16268381,16269990-16270036,
16271337-16271438,16272720-16272843,16272981-16273028,
16273934-16274026,16274325-16274408,16274536-16274619,
16274751-16274819,16275531-16275590,16275946-16276017,
16276957-16277064,16278162-16278238,16278391-16278474,
16278617-16278728,16278778-16278810,16278811-16278900,
16279012-16279077,16279163-16279258,16279446-16279497,
16279723-16279775,16279998-16280018
Length = 1165
Score = 29.1 bits (62), Expect = 4.0
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = +1
Query: 433 TTNKSTXSKADKRNRKFKEAERLFSKSSITSMAAVSGLVDAAEAKNERNSETESQTNEDS 612
T N ST D K K + + SKS+ T AA G D +E +N+R + S
Sbjct: 174 TENSSTSRIKDVSEDK-KVSIKKQSKSAKTIAAAKIGTTDVSEEENKREISKSEKNANIS 232
Query: 613 SDTQISSNL 639
D + S+ L
Sbjct: 233 RDKKTSNRL 241
>07_01_0287 - 2094333-2094542,2094719-2095999
Length = 496
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 526 MAAVSGLVDAAEAKNERNSETESQTNEDSSDTQISSNLNLGGL 654
+ AVS L DA E + +S + ED T++ GGL
Sbjct: 411 VVAVSSLADAGEGSSSSDSSFAALGGEDKYKTKLCKTFTSGGL 453
>02_02_0500 - 10993675-10994067,10994434-10995738
Length = 565
Score = 28.3 bits (60), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 307 KRKAEVAETLANLERQIYAFEGSYLEDTQLYGNI 408
K AE + L +L+ Q F+G LED QL +I
Sbjct: 137 KLSAESGQQLGSLKDQRLVFDGEELEDNQLIADI 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.313 0.126 0.348
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,668,607
Number of Sequences: 37544
Number of extensions: 252678
Number of successful extensions: 541
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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