Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B16
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...   236   3e-63
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    29   0.58 
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    29   0.77 
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    28   1.4  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   5.5  
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe...    26   5.5  

>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  236 bits (577), Expect = 3e-63
 Identities = 116/231 (50%), Positives = 155/231 (67%)
 Frame = +3

Query: 111 SLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISXDPAHNISDAFDQK 290
           +L+N+++Q SL+WIF            SCSLA+Q+SKVR SVL+IS DPAHN+SDAF  K
Sbjct: 9   TLENLLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPAHNLSDAFGTK 68

Query: 291 FXKVPTKVKGFDNLFAMEIDPNVGLTXLPEEYFEGESEAMRLDKGVMQEIVGAFPAIDEA 470
           F K   KV GFDNL AMEIDPN+ +  + E+    +        G+MQ++    P IDEA
Sbjct: 69  FGKDARKVPGFDNLSAMEIDPNLSIQEMTEQ--ADQQNPNNPLSGMMQDLAFTIPGIDEA 126

Query: 471 MSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPXINQIA 650
           +++AE++K +K M F  V+FDTAPTGHTLR L+FP V+E+ LGKL  L S+  P INQ+ 
Sbjct: 127 LAFAEILKQIKSMEFDCVIFDTAPTGHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMG 186

Query: 651 SLFGLADFNSDMXSNKMDEMLSVIXQVNAQLKDPNQTTFVCVCIAXFLSLY 803
           S+ G+     D+   KM+ M + I +VN Q K+P+ TTFVCVCI+ FLSLY
Sbjct: 187 SIMGVNANEQDLF-GKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLY 236


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 14/61 (22%), Positives = 28/61 (45%)
 Frame = +3

Query: 399 SEAMRLDKGVMQEIVGAFPAIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQ 578
           ++A+     +   ++ +   +D    Y ++  L+    F   V+D +  GH+  L SFP 
Sbjct: 641 TDALYSGSSICYSLIFSHSLLDLTFQYVDIASLLS--QFLLCVYDPSNVGHSFALASFPY 698

Query: 579 V 581
           V
Sbjct: 699 V 699


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 154 SLEGKAELGKLRAVAVSQFSCRKFANLC*SYXLILPTIS 270
           +LE   E GKLRA+ VS F       L  S+  I+P ++
Sbjct: 123 ALEKGVEEGKLRAIGVSNFGPHHIQELLDSHPKIIPCVN 161


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
 Frame = +3

Query: 741 LKDPNQTTF---VCVCIAXFLSLY 803
           LKDPN TTF   VC+ I  + SLY
Sbjct: 137 LKDPNDTTFRYPVCLVIPTYWSLY 160


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 59  TNRQLWKILKIXEPLATFVEK 121
           + R LWK+ KI  PLA  V K
Sbjct: 376 SKRNLWKVFKIYGPLAQIVLK 396


>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 443

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = +2

Query: 68  QLWKILKIXEPLATFVEKCYRSKVVKVDFRWRERRSWENYVQLQSRSSAVE 220
           ++W  L   +     +++  +S    +D + RER  WEN +Q  S+    E
Sbjct: 131 EIWVDLDREDLAYPEIQQALQSISHSIDLQERERIEWENTIQTSSQQKYEE 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,476
Number of Sequences: 5004
Number of extensions: 48996
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)