Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P29_F_B16
         (803 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_05_0014 - 20071514-20071690,20071779-20071894,20072177-200723...   230   1e-60
02_05_0729 - 31271566-31271730,31271799-31271933,31272210-312722...    89   5e-18
09_05_0004 + 20021394-20023430                                         32   0.61 
05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017           31   1.4  
02_05_0571 - 30072521-30072595,30072681-30072749,30072826-300729...    31   1.4  
04_01_0616 - 8069107-8069217,8070127-8070499,8070514-8070751,807...    29   3.3  
05_05_0084 - 22262007-22262300,22262435-22262707,22263418-222634...    29   4.3  
06_02_0051 - 10957857-10958127,10959791-10960035,10960160-109602...    28   7.6  

>09_05_0014 -
           20071514-20071690,20071779-20071894,20072177-20072315,
           20072649-20072672,20072879-20072989,20073089-20073239,
           20073357-20073478,20074287-20074556
          Length = 369

 Score =  230 bits (562), Expect = 1e-60
 Identities = 119/241 (49%), Positives = 159/241 (65%), Gaps = 9/241 (3%)
 Frame = +3

Query: 108 PSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISXDPAHNISDAFDQ 287
           P+++N+++Q+SL+W+F           CS  L++ L+  R+SVL+IS DPAHN+SDAF Q
Sbjct: 13  PTVRNLLEQESLKWVFVGGKGGVGKTTCSSILSILLASARQSVLVISTDPAHNLSDAFQQ 72

Query: 288 KFXKVPTKVKGFDNLFAMEIDPNVGLTXLPEEYFEGESEAMRLDKGVMQEIVGAFPAIDE 467
           +F K PT V+GF+NL+AMEIDP V       E  +  +E M   +G + E+  A P +DE
Sbjct: 73  RFTKFPTLVRGFNNLYAMEIDPKV-------ENDDFANEGM---EGFLSELTNAIPGVDE 122

Query: 468 AMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVAPXINQI 647
           AMS+AE++KLV+ M++S VVFDTAPTGHTLRLL FP  +E+GL K+M LK+K    +NQ 
Sbjct: 123 AMSFAEMLKLVQTMDYSVVVFDTAPTGHTLRLLQFPATLEKGLEKMMALKNKFGGLLNQA 182

Query: 648 ASLFGLAD-FNSDMXSNKMDEMLSVIXQVNAQLKDP--------NQTTFVCVCIAXFLSL 800
             LFGL D  N D    +++ M  VI QVN Q KDP        + TTFVCVCI  FLSL
Sbjct: 183 TRLFGLGDELNEDAMLGRLEGMKDVIEQVNRQFKDPIWSNLLEKDLTTFVCVCIPEFLSL 242

Query: 801 Y 803
           Y
Sbjct: 243 Y 243


>02_05_0729 -
           31271566-31271730,31271799-31271933,31272210-31272284,
           31273003-31273068,31273154-31273222,31273303-31273377,
           31273518-31273628,31273947-31274009,31274064-31274453
          Length = 382

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 60/191 (31%), Positives = 99/191 (51%), Gaps = 33/191 (17%)
 Frame = +3

Query: 189 CSCSLAVQLSKVRESVLIISXDPAHNISDAFDQKFXKVPTKVKGFDNL------------ 332
           C+ SLAV+ +      L++S DPAH++SD+F Q    V   +  F++L            
Sbjct: 85  CAASLAVRFANNGHPTLVVSTDPAHSLSDSFAQVASPVEHLLSRFEDLSGGALVPVEGPE 144

Query: 333 ---FAMEIDPNVGLTXLPEEYFEGESEAMR-----LDKGVMQEIVGAF----------PA 458
              FA+EI+P            +     ++     +  GV+ E +G            P 
Sbjct: 145 APLFALEINPEKAREEFRAASQKNGGTGVKDFMDGMGLGVLAEQLGELKLGELLDTPPPG 204

Query: 459 IDEAMSYAEVMKLVKGMNFSA---VVFDTAPTGHTLRLLSFPQVVERGLGKLMRLKSKVA 629
           +DEA++ ++VM+ ++   +S    +VFDTAPTGHTLRLLS P  ++  +GK+++L+SK+A
Sbjct: 205 LDEAIAISKVMQFLEAQEYSMFRRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLRSKIA 264

Query: 630 PXINQIASLFG 662
              + I S+FG
Sbjct: 265 SATSAIKSVFG 275


>09_05_0004 + 20021394-20023430
          Length = 678

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 512 VHAFY*FHHLSIAHSLINSRESSNNLLHDTLVQSHS 405
           +HAF    H+ +AH L +   S +N+  +TL+  HS
Sbjct: 197 LHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHS 232


>05_01_0503 - 4196989-4197425,4197507-4199436,4200910-4201017
          Length = 824

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 372 LPEEYFEGESEAMRLDKGVMQEIVGAFPAIDEAMSYAEVMKLVKGMNFSAVV 527
           +  +YF G S   + + GV  E VGA   I + +S   V K+  G  F+  V
Sbjct: 531 IENQYFLGSSYCWKPNDGVKPEDVGALHLIPKELSMKVVSKIEAGERFTVYV 582


>02_05_0571 -
           30072521-30072595,30072681-30072749,30072826-30072900,
           30072981-30073050,30073168-30073279,30073576-30073674,
           30073847-30073939,30074994-30075062,30076845-30076911
          Length = 242

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 192 SCSLAVQLSKVRESVLIISXDPAHNISDAFDQKFXKV 302
           +C +A  L ++ E + I+S DP   I ++FD+ F  V
Sbjct: 120 NCEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYV 156


>04_01_0616 -
           8069107-8069217,8070127-8070499,8070514-8070751,
           8070881-8071189,8071225-8071363
          Length = 389

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 596 RQADAFEVKGCPL---HQSNCVTVWTSRFQLGHVQQQNG*DV 712
           RQA+  EV+ C L    +  C  VW    + GHV   +G D+
Sbjct: 331 RQAEMLEVRSCSLDLKQRHPCQQVWKFDLEKGHVNVVSGADI 372


>05_05_0084 -
           22262007-22262300,22262435-22262707,22263418-22263468,
           22263944-22264035,22264715-22264724
          Length = 239

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 154 SLEGKAELGKLRAVAVSQFSCRKFANL 234
           ++E   + GK RA+ VS FSC+K  +L
Sbjct: 80  AMEKLYDSGKARAIGVSNFSCKKLEDL 106


>06_02_0051 -
           10957857-10958127,10959791-10960035,10960160-10960229,
           10960319-10960986
          Length = 417

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 195 CSLAVQLSKVRESVLIISXDPA--HNISDAFDQKFXKVPTKVKGFDNLFAMEIDPNVGLT 368
           C++A++L++   +++++  DPA    IS     +  +V TK   FD   A   D +  L 
Sbjct: 72  CAMALELARRGLNLVLVGRDPARLREISGTIRSRHGRVQTKAVVFDLSLASTPDGDQPLR 131

Query: 369 XLPE 380
            L E
Sbjct: 132 RLRE 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,537
Number of Sequences: 37544
Number of extensions: 298467
Number of successful extensions: 662
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)